Detailed information of deep learning profile BP000077.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in brain microvascular endothelial cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000077.1
Cell line/tissue: brain microvascular endothelial cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DTA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.01 -0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 ]
C [ 0.00 0.02 0.01 -0.00 0.10 0.16 0.00 0.05 0.02 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.06 0.00 0.02 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.17 0.08 0.05 0.14 0.09 0.00 0.04 0.01 -0.00 0.01 ]
T [ -0.00 0.00 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]

Frequency matrix

       
A [ 5287 4719 4289 5876 7439 5741 4356 5219 4085 4826 5487 5851 5480 5666 4886 3453 5013 6177 2353 1305 13076 1893 3710 16989 354 6236 2835 884 1707 4897 7189 3189 4202 6764 4455 5871 4913 5747 5268 5252 5349 6259 5235 5654 5815 5786 5682 5666 5573 5730 ]
C [ 5351 4262 5701 6915 5072 4778 4158 5509 8958 7840 6824 5997 5912 5234 6438 7775 5229 2992 16893 20181 1577 11491 8674 549 145 301 1218 860 2724 12279 3138 9400 6443 5260 4894 4768 4851 5691 6301 7039 6204 5141 5635 5435 5286 5333 5517 5555 5602 5498 ]
G [ 5522 7057 7352 4353 5143 5291 5024 5128 3811 4168 4857 5268 5185 4766 5475 3388 6889 8891 1717 463 3347 8058 2062 2976 21548 15238 12767 19497 15649 2268 9604 6041 3665 6599 6016 5324 7972 5929 5920 4739 5050 5788 5993 5884 5827 5752 5498 5816 5951 5704 ]
T [ 6172 6294 4990 5188 4678 6522 8794 6476 5478 5498 5164 5216 5755 6666 5533 7716 5201 4272 1369 383 4332 890 7886 1818 285 557 5512 1091 2252 2888 2401 3702 8022 3709 6967 6369 4596 4965 4843 5302 5729 5144 5469 5359 5404 5461 5635 5295 5206 5400 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.01 -0.03 -0.02 0.02 -0.02 -0.03 0.03 -0.03 -0.02 0.08 -0.06 0.03 -0.05 -0.06 -0.05 -0.01 0.01 -0.02 -0.02 0.01 -0.02 0.00 -0.01 -0.00 ]
C [ 0.02 0.02 0.01 0.03 0.05 0.04 -0.01 0.12 0.17 -0.02 0.10 0.05 -0.02 -0.03 -0.07 -0.00 -0.03 -0.02 0.10 -0.00 0.06 0.03 0.02 0.02 0.01 0.02 0.02 ]
G [ 0.01 0.02 0.01 0.02 -0.00 0.04 0.05 -0.03 -0.03 0.07 0.05 -0.02 0.03 0.17 0.13 0.09 0.15 0.11 -0.00 0.10 0.04 -0.00 0.03 0.02 0.01 0.04 0.02 ]
T [ -0.01 -0.00 0.01 0.00 0.01 -0.01 -0.02 -0.05 -0.08 -0.03 -0.07 0.05 -0.03 -0.05 -0.07 0.00 -0.04 -0.01 -0.03 -0.05 -0.01 0.02 -0.03 0.02 0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 139

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000031.1 CTCF ENCSR000DKP GM10248 Homo sapiens MA0139.2
BP000032.1 CTCF ENCSR000DKR GM10266 Homo sapiens MA0139.2
BP000033.1 CTCF ENCSR000DKV GM12878 Homo sapiens MA0139.2
BP000034.1 CTCF ENCSR000DKZ GM13976 Homo sapiens MA0139.2
BP000035.1 CTCF ENCSR000DLB GM13977 Homo sapiens MA0139.2
BP000036.1 CTCF ENCSR000DLG GM20000 Homo sapiens MA0139.2
BP000037.1 CTCF ENCSR000DLK H1 Homo sapiens MA0139.2
BP000038.1 CTCF ENCSR000DLO HeLa-S3 Homo sapiens MA0139.2
BP000039.1 CTCF ENCSR000DLS HepG2 Homo sapiens MA0139.2
BP000040.1 CTCF ENCSR000DLW endothelial cell of umbilical vein Homo sapiens MA0139.2
Showing 10 profiles of page 4 from 45 pages