Detailed information of deep learning profile BP000076.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in astrocyte of the cerebellum using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000076.1
Cell line/tissue: astrocyte of the cerebellum
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DSZ
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.16 -0.00 0.05 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.07 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.16 0.07 0.05 0.14 0.09 0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4701 4181 3957 5372 7128 5194 3957 4696 3866 4392 4945 5244 5062 5138 4515 3153 4540 5645 2119 1011 12007 1688 3356 16084 355 6409 2264 629 1305 4198 6675 2711 3602 6435 3948 5483 4464 5318 4753 4698 5232 5806 4646 5162 5334 5365 5309 5229 5255 5163 ]
C [ 4930 3910 5213 6419 4381 4285 3697 5093 8397 7098 6328 5633 5589 4934 5647 7276 4777 2524 15481 18864 1441 10739 7980 605 148 308 1155 504 2078 12261 2353 9411 6035 4807 4423 4268 4292 5331 6019 6716 6006 4844 5348 4929 4954 4966 5024 5105 5258 5112 ]
G [ 5135 6730 6817 3963 4805 5024 4578 4728 3366 3815 4497 4957 4734 4356 5067 3187 6346 8526 1661 429 3356 7385 1941 2380 19863 13447 11840 18749 15367 1778 9608 5471 2978 6203 5548 4914 7810 5478 5518 4212 4315 5411 5500 5530 5392 5151 5023 5485 5431 5384 ]
T [ 5832 5777 4611 4844 4284 6095 8366 6081 4969 5293 4828 4764 5213 6170 5369 6982 4935 3903 1337 294 3794 786 7321 1529 232 434 5339 716 1848 2361 1962 3005 7983 3153 6679 5933 4032 4471 4308 4972 5045 4537 5104 4977 4918 5116 5242 4779 4654 4939 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.01 -0.03 -0.02 0.01 -0.02 -0.04 0.03 -0.03 -0.02 0.08 -0.06 0.03 -0.06 -0.05 -0.05 -0.01 0.01 -0.02 -0.02 0.02 -0.02 0.01 ]
C [ 0.02 0.02 0.01 0.02 0.05 0.03 -0.01 0.11 0.17 -0.03 0.10 0.05 -0.02 -0.03 -0.06 -0.00 -0.04 -0.02 0.10 -0.01 0.06 0.03 0.02 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.02 0.00 0.04 0.05 -0.02 -0.03 0.06 0.04 -0.02 0.03 0.16 0.12 0.09 0.15 0.11 -0.02 0.10 0.03 -0.00 0.02 0.02 0.01 ]
T [ -0.00 -0.00 0.01 0.00 0.02 -0.01 -0.02 -0.04 -0.08 -0.03 -0.06 0.05 -0.04 -0.04 -0.06 0.01 -0.04 -0.01 -0.02 -0.05 -0.01 0.02 -0.03 0.02 0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages