Detailed information of deep learning profile BP000075.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in astrocyte of the spinal cord using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000075.1
Cell line/tissue: astrocyte of the spinal cord
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DSU
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 0.00 0.09 0.15 0.05 0.07 0.17 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 0.00 0.07 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.05 0.00 0.16 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 5098 4872 4945 5537 5407 5114 5183 5209 4676 5315 5187 4550 4659 4251 6268 7154 3171 8274 3005 1868 2305 1884 619 5698 427 236 1652 7657 839 3977 359 1467 4107 5146 7267 5516 6334 5539 5103 4954 5518 5122 6266 8450 6381 4579 5064 4799 5991 6039 ]
C [ 5635 5654 5635 5244 5325 5706 5780 5881 5679 4568 4319 5729 5761 8172 4954 5742 6428 2937 5773 9998 1728 16264 19782 12320 14106 20754 2529 2050 7800 3525 492 1772 8784 6584 3428 5262 4565 5081 5218 4823 4033 3715 5052 4805 5109 5084 4196 7043 6985 5367 ]
G [ 5335 5475 5328 5213 5071 4969 5099 5507 4927 6353 7090 6337 5628 4412 4464 4584 5041 6558 10027 2427 13062 2026 438 1007 259 117 599 8175 10967 1495 19431 15943 2687 4957 7504 5988 5087 5711 5698 6531 7269 8544 5218 4007 4601 4646 6586 5502 4037 5132 ]
T [ 5409 5476 5569 5483 5674 5688 5415 4880 6195 5241 4881 4861 5429 4642 5791 3997 6837 3708 2672 7184 4382 1303 638 2452 6685 370 16697 3595 1871 12480 1195 2295 5899 4790 3278 4711 5491 5146 5458 5169 4657 4096 4941 4215 5386 7168 5631 4133 4464 4939 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.03 0.03 -0.01 -0.05 -0.03 -0.00 -0.05 0.01 -0.07 -0.04 -0.03 0.05 -0.06 -0.02 -0.08 -0.04 -0.02 -0.01 0.02 0.00 0.01 0.00 -0.00 ]
C [ 0.01 0.03 0.01 0.02 0.03 -0.01 0.04 0.11 -0.01 0.11 0.16 0.10 0.12 0.17 0.03 -0.02 0.05 0.06 -0.03 -0.02 0.05 0.04 -0.00 0.02 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.06 -0.01 0.11 -0.02 -0.04 -0.00 -0.07 -0.02 -0.02 0.05 0.11 -0.02 0.17 0.11 -0.01 0.04 0.05 0.02 0.01 0.02 0.03 ]
T [ 0.00 -0.00 0.01 -0.02 0.02 -0.02 -0.03 0.02 -0.02 -0.05 -0.05 -0.05 0.04 -0.06 0.09 -0.02 -0.03 0.03 -0.03 -0.01 0.02 -0.02 -0.03 -0.00 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 363

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_2

Num. of seqlets: 28

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages