Detailed information of deep learning profile BP000075.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in astrocyte of the spinal cord using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000075.1
Cell line/tissue: astrocyte of the spinal cord
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DSU
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.16 0.00 0.05 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.07 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.17 0.07 0.05 0.15 0.09 0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4939 4464 4133 5631 7168 5386 4215 4941 4096 4657 5169 5458 5146 5491 4711 3278 4790 5899 2295 1195 12480 1871 3595 16697 370 6685 2452 638 1303 4382 7184 2672 3708 6837 3997 5791 4642 5429 4861 4881 5241 6195 4880 5415 5688 5674 5483 5569 5476 5409 ]
C [ 5132 4037 5502 6586 4646 4601 4007 5218 8544 7269 6531 5698 5711 5087 5988 7504 4957 2687 15943 19431 1495 10967 8175 599 117 259 1007 438 2026 13062 2427 10027 6558 5041 4584 4464 4412 5628 6337 7090 6353 4927 5507 5099 4969 5071 5213 5328 5475 5335 ]
G [ 5367 6985 7043 4196 5084 5109 4805 5052 3715 4033 4823 5218 5081 4565 5262 3428 6584 8784 1772 492 3525 7800 2050 2529 20754 14106 12320 19782 16264 1728 9998 5773 2937 6428 5742 4954 8172 5761 5729 4319 4568 5679 5881 5780 5706 5325 5244 5635 5654 5635 ]
T [ 6039 5991 4799 5064 4579 6381 8450 6266 5122 5518 4954 5103 5539 6334 5516 7267 5146 4107 1467 359 3977 839 7657 1652 236 427 5698 619 1884 2305 1868 3005 8274 3171 7154 6268 4251 4659 4550 5187 5315 4676 5209 5183 5114 5407 5537 4945 4872 5098 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.00 -0.03 -0.02 0.02 -0.01 -0.03 0.03 -0.03 -0.02 0.09 -0.06 0.04 -0.05 -0.05 -0.05 -0.02 0.02 -0.03 -0.02 0.02 -0.02 0.01 -0.00 0.00 ]
C [ 0.03 0.02 0.01 0.02 0.05 0.04 -0.01 0.11 0.17 -0.02 0.11 0.05 -0.02 -0.02 -0.07 -0.00 -0.04 -0.02 0.11 -0.01 0.06 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.02 -0.00 0.04 0.05 -0.02 -0.03 0.06 0.05 -0.02 0.03 0.17 0.12 0.10 0.16 0.11 -0.01 0.11 0.04 -0.01 0.03 0.02 0.01 0.03 0.01 ]
T [ -0.00 0.00 0.01 0.00 0.02 -0.01 -0.02 -0.04 -0.08 -0.02 -0.06 0.05 -0.03 -0.04 -0.07 0.01 -0.05 -0.00 -0.03 -0.05 -0.01 0.03 -0.03 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 363

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_2

Num. of seqlets: 28

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000021.1 CTCF ENCSR000BHV A549 Homo sapiens MA0139.2
BP000022.1 CTCF ENCSR000BHW A549 Homo sapiens MA0139.2
BP000023.1 CTCF ENCSR000BIE HepG2 Homo sapiens MA0139.2
BP000024.1 CTCF ENCSR000BLX SK-N-SH Homo sapiens MA0139.2
BP000025.1 CTCF ENCSR000BNH H1 Homo sapiens MA0139.2
BP000026.1 CTCF ENCSR000BNO T47D Homo sapiens MA0139.2
BP000027.1 CTCF ENCSR000BPJ K562 Homo sapiens MA0139.2
BP000028.1 CTCF ENCSR000BQE Ishikawa Homo sapiens MA0139.2
BP000029.1 CTCF ENCSR000BSE HCT116 Homo sapiens MA0139.2
BP000030.1 CTCF ENCSR000DKN H54 Homo sapiens MA0139.2
Showing 10 profiles of page 3 from 45 pages