Detailed information of deep learning profile BP000074.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000074.1
Cell line/tissue: GM12878
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DRZ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 0.00 0.11 0.18 0.07 0.09 0.19 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 0.00 0.09 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.07 0.00 0.19 0.10 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.08 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 4754 4574 4613 5254 5094 4905 4799 5004 4398 5202 4961 4137 4347 3912 5908 6866 2988 8156 2698 1566 2213 1953 552 6148 362 227 1650 7743 797 3618 296 1355 3763 4795 7082 5236 6091 5232 4743 4811 5164 4950 5971 8127 6269 4265 4698 4672 5663 5760 ]
C [ 5274 5329 5428 4949 4940 5217 5493 5426 5268 4036 3887 5246 5429 7828 4549 5276 5769 2548 5522 9218 1501 15400 18787 11522 13052 19541 2367 1929 7132 2978 364 1672 8260 6296 3252 4985 4321 4558 4825 4554 3782 3424 4597 4594 4780 4771 3888 6567 6696 5104 ]
G [ 4998 5193 4914 4814 4831 4682 4876 5321 4537 6037 6822 6093 5335 4062 4155 4256 4802 6198 9659 2132 12980 1819 367 917 254 120 634 7253 10637 1583 18691 15077 2550 4622 6647 5478 4785 5466 5758 6002 7037 8106 4951 3645 4163 4428 6293 5195 3754 4827 ]
T [ 5204 5134 5275 5213 5365 5426 5062 4479 6027 4955 4560 4754 5119 4428 5618 3832 6671 3328 2351 7314 3536 1058 524 1643 6562 342 15579 3305 1664 12051 879 2126 5657 4517 3249 4531 5033 4974 4904 4863 4247 3750 4711 3864 5018 6766 5351 3796 4117 4539 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.04 0.03 -0.01 -0.06 -0.03 0.00 -0.04 0.02 -0.07 -0.04 -0.03 0.07 -0.06 -0.03 -0.09 -0.05 -0.02 -0.01 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.02 0.04 0.01 0.02 0.03 -0.00 0.04 0.13 -0.01 0.14 0.19 0.12 0.14 0.20 0.03 -0.02 0.05 0.07 -0.03 -0.03 0.06 0.04 0.00 0.02 0.02 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.03 0.04 0.07 -0.02 0.13 -0.03 -0.04 -0.00 -0.07 -0.02 -0.01 0.06 0.13 -0.02 0.20 0.13 -0.01 0.04 0.06 0.03 0.02 0.02 0.03 ]
T [ 0.00 -0.01 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.02 -0.06 -0.06 -0.07 0.04 -0.06 0.10 -0.02 -0.03 0.04 -0.04 -0.01 0.02 -0.02 -0.03 -0.01 -0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 358

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 39

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages