Detailed information of deep learning profile BP000074.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000074.1
Cell line/tissue: GM12878
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DRZ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.08 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.10 0.19 0.00 0.07 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.09 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.19 0.09 0.07 0.18 0.11 0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4539 4117 3796 5351 6766 5018 3864 4711 3750 4247 4863 4904 4974 5033 4531 3249 4517 5657 2126 879 12051 1664 3305 15579 342 6562 1643 524 1058 3536 7314 2351 3328 6671 3832 5618 4428 5119 4754 4560 4955 6027 4479 5062 5426 5365 5213 5275 5134 5204 ]
C [ 4827 3754 5195 6293 4428 4163 3645 4951 8106 7037 6002 5758 5466 4785 5478 6647 4622 2550 15077 18691 1583 10637 7253 634 120 254 917 367 1819 12980 2132 9659 6198 4802 4256 4155 4062 5335 6093 6822 6037 4537 5321 4876 4682 4831 4814 4914 5193 4998 ]
G [ 5104 6696 6567 3888 4771 4780 4594 4597 3424 3782 4554 4825 4558 4321 4985 3252 6296 8260 1672 364 2978 7132 1929 2367 19541 13052 11522 18787 15400 1501 9218 5522 2548 5769 5276 4549 7828 5429 5246 3887 4036 5268 5426 5493 5217 4940 4949 5428 5329 5274 ]
T [ 5760 5663 4672 4698 4265 6269 8127 5971 4950 5164 4811 4743 5232 6091 5236 7082 4795 3763 1355 296 3618 797 7743 1650 227 362 6148 552 1953 2213 1566 2698 8156 2988 6866 5908 3912 4347 4137 4961 5202 4398 5004 4799 4905 5094 5254 4613 4574 4754 ]

Hypothetical CWM

   
A [ -0.00 0.00 -0.00 -0.01 -0.03 -0.02 0.02 -0.01 -0.04 0.04 -0.03 -0.02 0.10 -0.06 0.04 -0.07 -0.06 -0.06 -0.02 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.01 0.00 ]
C [ 0.03 0.02 0.02 0.03 0.06 0.04 -0.01 0.13 0.20 -0.02 0.13 0.06 -0.01 -0.02 -0.07 -0.00 -0.04 -0.03 0.13 -0.02 0.07 0.04 0.03 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.02 0.02 0.00 0.04 0.06 -0.03 -0.03 0.07 0.05 -0.02 0.03 0.20 0.14 0.12 0.19 0.14 -0.01 0.13 0.04 -0.00 0.03 0.02 0.01 0.04 0.02 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.01 -0.02 -0.05 -0.09 -0.03 -0.06 0.07 -0.03 -0.04 -0.07 0.02 -0.04 0.00 -0.03 -0.06 -0.01 0.03 -0.04 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 358

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 39

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000041.1 CTCF ENCSR000DMA K562 Homo sapiens MA0139.2
BP000042.1 CTCF ENCSR000DMC kidney Homo sapiens MA0139.2
BP000043.1 CTCF ENCSR000DME LNCaP clone FGC Homo sapiens MA0139.2
BP000044.1 CTCF ENCSR000DMF LNCaP clone FGC Homo sapiens MA0139.2
BP000045.1 CTCF ENCSR000DMH lung Homo sapiens MA0139.2
BP000046.1 CTCF ENCSR000DML MCF-7 Homo sapiens MA0139.2
BP000047.1 CTCF ENCSR000DMO MCF-7 Homo sapiens MA0139.2
BP000048.1 CTCF ENCSR000DMR MCF-7 Homo sapiens MA0139.2
BP000049.1 CTCF ENCSR000DMS MCF-7 Homo sapiens MA0139.2
BP000050.1 CTCF ENCSR000DMV MCF-7 Homo sapiens MA0139.2
Showing 10 profiles of page 5 from 45 pages