Detailed information of deep learning profile BP000073.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in GM12875 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000073.1
Cell line/tissue: GM12875
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DRU
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.10 0.18 0.00 0.06 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.08 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.18 0.08 0.06 0.17 0.10 0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4181 3753 3524 5095 6399 4679 3534 4398 3434 3872 4645 4657 4622 4704 4297 2912 4112 5285 1866 688 11379 1507 3008 14353 349 5895 1605 498 1027 3339 6656 2282 3145 6169 3573 5193 4186 4798 4324 4211 4693 5561 4187 4542 4955 4922 4814 4877 4781 4742 ]
C [ 4555 3520 4828 5920 4145 3872 3465 4606 7771 6665 5766 5322 5164 4545 5181 6246 4423 2357 14369 17686 1489 10106 6863 671 140 252 919 363 1875 12044 2192 8998 5760 4567 4045 3938 3887 5085 5708 6427 5646 4298 4966 4693 4481 4627 4690 4649 4908 4783 ]
G [ 4938 6355 6378 3671 4515 4583 4296 4370 3194 3509 4208 4603 4367 4046 4601 3090 6000 7810 1513 371 2768 6615 1902 2369 18277 12450 10745 17586 14242 1499 8622 5169 2555 5478 4999 4410 7350 5063 5079 3699 3879 5024 5129 5224 4997 4681 4607 5090 5088 5086 ]
T [ 5306 5352 4250 4294 3921 5846 7685 5606 4581 4934 4361 4398 4827 5685 4901 6732 4445 3528 1232 235 3344 752 7207 1587 214 383 5711 533 1836 2098 1510 2531 7520 2766 6363 5439 3557 4034 3869 4643 4762 4097 4698 4521 4547 4750 4869 4364 4203 4369 ]

Hypothetical CWM

   
A [ -0.01 -0.00 -0.00 -0.01 -0.03 -0.02 0.02 -0.02 -0.04 0.03 -0.03 -0.02 0.09 -0.06 0.03 -0.07 -0.07 -0.05 -0.02 0.01 -0.02 -0.02 0.02 -0.02 0.01 -0.01 -0.00 ]
C [ 0.03 0.02 0.02 0.03 0.06 0.04 -0.01 0.13 0.19 -0.03 0.12 0.05 -0.01 -0.03 -0.06 -0.00 -0.04 -0.02 0.12 -0.01 0.07 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.01 0.02 0.00 0.04 0.07 -0.03 -0.02 0.08 0.05 -0.01 0.03 0.18 0.13 0.11 0.17 0.12 -0.01 0.12 0.04 -0.00 0.03 0.03 0.01 0.04 0.02 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.01 -0.02 -0.04 -0.09 -0.03 -0.06 0.06 -0.03 -0.05 -0.07 0.01 -0.04 -0.00 -0.03 -0.06 -0.02 0.02 -0.04 0.02 0.00 -0.01 -0.01 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages