Detailed information of deep learning profile BP000073.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in GM12875 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000073.1
Cell line/tissue: GM12875
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DRU
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 0.00 0.10 0.17 0.06 0.08 0.18 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 0.00 0.08 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.06 0.00 0.18 0.10 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 4369 4203 4364 4869 4750 4547 4521 4698 4097 4762 4643 3869 4034 3557 5439 6363 2766 7520 2531 1510 2098 1836 533 5711 383 214 1587 7207 752 3344 235 1232 3528 4445 6732 4901 5685 4827 4398 4361 4934 4581 5606 7685 5846 3921 4294 4250 5352 5306 ]
C [ 5086 5088 5090 4607 4681 4997 5224 5129 5024 3879 3699 5079 5063 7350 4410 4999 5478 2555 5169 8622 1499 14242 17586 10745 12450 18277 2369 1902 6615 2768 371 1513 7810 6000 3090 4601 4046 4367 4603 4208 3509 3194 4370 4296 4583 4515 3671 6378 6355 4938 ]
G [ 4783 4908 4649 4690 4627 4481 4693 4966 4298 5646 6427 5708 5085 3887 3938 4045 4567 5760 8998 2192 12044 1875 363 919 252 140 671 6863 10106 1489 17686 14369 2357 4423 6246 5181 4545 5164 5322 5766 6665 7771 4606 3465 3872 4145 5920 4828 3520 4555 ]
T [ 4742 4781 4877 4814 4922 4955 4542 4187 5561 4693 4211 4324 4798 4186 5193 3573 6169 3145 2282 6656 3339 1027 498 1605 5895 349 14353 3008 1507 11379 688 1866 5285 4112 2912 4297 4704 4622 4657 4645 3872 3434 4398 3534 4679 6399 5095 3524 3753 4181 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.00 0.02 -0.04 0.02 -0.02 -0.06 -0.03 -0.00 -0.04 0.01 -0.07 -0.05 -0.03 0.06 -0.06 -0.03 -0.09 -0.04 -0.02 -0.01 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.02 0.04 0.01 0.03 0.03 -0.00 0.04 0.12 -0.01 0.12 0.17 0.11 0.13 0.18 0.03 -0.01 0.05 0.08 -0.02 -0.03 0.07 0.04 0.00 0.02 0.01 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.07 -0.01 0.12 -0.02 -0.04 -0.00 -0.06 -0.03 -0.01 0.05 0.12 -0.03 0.19 0.13 -0.01 0.04 0.06 0.03 0.02 0.02 0.03 ]
T [ -0.00 -0.01 0.01 -0.02 0.02 -0.02 -0.02 0.01 -0.02 -0.05 -0.07 -0.07 0.03 -0.06 0.09 -0.02 -0.03 0.03 -0.04 -0.02 0.02 -0.02 -0.03 -0.01 -0.00 -0.00 -0.01 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000041.1 CTCF ENCSR000DMA K562 Homo sapiens MA0139.2
BP000042.1 CTCF ENCSR000DMC kidney Homo sapiens MA0139.2
BP000043.1 CTCF ENCSR000DME LNCaP clone FGC Homo sapiens MA0139.2
BP000044.1 CTCF ENCSR000DMF LNCaP clone FGC Homo sapiens MA0139.2
BP000045.1 CTCF ENCSR000DMH lung Homo sapiens MA0139.2
BP000046.1 CTCF ENCSR000DML MCF-7 Homo sapiens MA0139.2
BP000047.1 CTCF ENCSR000DMO MCF-7 Homo sapiens MA0139.2
BP000048.1 CTCF ENCSR000DMR MCF-7 Homo sapiens MA0139.2
BP000049.1 CTCF ENCSR000DMS MCF-7 Homo sapiens MA0139.2
BP000050.1 CTCF ENCSR000DMV MCF-7 Homo sapiens MA0139.2
Showing 10 profiles of page 5 from 45 pages