Detailed information of deep learning profile BP000071.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in GM12873 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000071.1
Cell line/tissue: GM12873
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DRP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.03 -0.00 -0.00 0.07 -0.00 0.01 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.10 0.18 -0.00 0.06 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.07 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.18 0.08 0.06 0.15 0.09 0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4491 4095 3782 5368 6621 4993 3886 4719 3682 4187 4807 4952 4885 5009 4435 3209 4436 5703 1987 898 11972 1595 3323 15214 341 5805 1980 617 1483 3984 6570 2705 3667 6148 3946 5339 4417 5158 4702 4523 4952 5610 4617 4930 5316 5037 5151 5033 5110 4983 ]
C [ 4833 3786 5213 6315 4558 4336 3806 4983 8476 7182 6177 5727 5576 4937 5689 6816 4933 2537 15573 18674 1447 10905 7337 578 149 238 935 531 2442 11833 2955 9107 6013 4936 4372 4345 4384 5302 5984 6647 5810 4750 5292 5059 4784 5051 5031 5096 5198 5151 ]
G [ 5153 6848 6792 3934 4864 4861 4563 4753 3416 3775 4593 4904 4751 4360 5121 3213 6329 8302 1492 405 2821 6982 1936 2745 19475 13765 11717 18359 14280 1961 8828 5228 3028 5944 5426 4929 7473 5392 5332 4181 4422 5462 5495 5460 5266 5130 4982 5432 5398 5392 ]
T [ 5807 5555 4497 4667 4241 6094 8029 5829 4710 5140 4707 4701 5072 5978 5039 7046 4586 3742 1232 307 4044 802 7688 1747 319 476 5652 777 2079 2506 1931 3244 7576 3256 6540 5671 4010 4432 4266 4933 5100 4462 4880 4835 4918 5066 5120 4723 4578 4758 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.03 -0.02 0.02 -0.01 -0.04 0.04 -0.02 -0.02 0.09 -0.06 0.04 -0.06 -0.06 -0.05 -0.01 0.02 -0.02 -0.01 0.02 -0.01 0.01 -0.00 0.00 ]
C [ 0.03 0.02 0.01 0.02 0.06 0.05 -0.01 0.13 0.19 -0.02 0.12 0.05 -0.01 -0.02 -0.06 -0.00 -0.04 -0.02 0.11 -0.01 0.06 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.02 0.00 0.04 0.06 -0.03 -0.03 0.07 0.05 -0.01 0.03 0.18 0.13 0.11 0.16 0.11 -0.01 0.11 0.04 -0.00 0.03 0.02 0.01 0.04 0.02 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.01 -0.02 -0.04 -0.08 -0.02 -0.06 0.06 -0.03 -0.04 -0.07 0.01 -0.04 -0.00 -0.03 -0.05 -0.01 0.02 -0.03 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 613

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 556

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages