Detailed information of deep learning profile BP000070.1

  1. Home
  2. Deep Learning Profile > BP000070.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in GM12872 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000070.1
Cell line/tissue: GM12872
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DRN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.17 0.00 0.06 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.07 0.00 0.03 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.16 0.08 0.06 0.15 0.09 0.00 0.04 0.01 -0.00 0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]

Frequency matrix

       
A [ 4828 4319 3997 5598 7245 5322 4115 5008 3946 4428 5184 5242 5255 5399 4834 3428 4701 5859 2139 902 12609 1780 3608 16050 434 6267 2087 662 1406 4026 7068 2749 3843 6644 4179 5728 4703 5490 4929 4780 5316 6038 4832 5200 5642 5484 5447 5411 5385 5273 ]
C [ 5207 4013 5529 6813 4756 4450 4023 5322 8936 7772 6524 6017 5873 5232 5936 7182 5105 2808 16305 19915 1652 11434 7743 743 203 319 1086 562 2472 13005 2891 9982 6554 5267 4715 4689 4607 5698 6368 7204 6333 5075 5702 5419 5138 5342 5236 5423 5556 5435 ]
G [ 5491 7169 7290 4182 5148 5261 4928 5011 3719 3976 4781 5252 5067 4724 5402 3527 6852 8933 1774 444 3142 7513 2150 2991 20638 14477 12327 19580 15506 1935 9611 5619 3126 6304 5780 5133 8124 5774 5819 4320 4623 5711 5781 5800 5729 5412 5440 5822 5755 5751 ]
T [ 6070 6095 4780 5003 4447 6563 8530 6255 4995 5420 5107 5085 5401 6241 5424 7459 4938 3996 1378 335 4193 869 8095 1812 321 533 6096 792 2212 2630 2026 3246 8073 3381 6922 6046 4162 4634 4480 5292 5324 4772 5281 5177 5087 5358 5473 4940 4900 5137 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.02 -0.01 0.02 -0.01 -0.03 0.04 -0.02 -0.01 0.08 -0.05 0.03 -0.05 -0.05 -0.04 -0.01 0.01 -0.01 -0.01 0.02 -0.01 0.01 -0.00 0.00 ]
C [ 0.01 0.01 0.02 0.05 0.04 -0.01 0.12 0.18 -0.00 0.11 0.05 -0.01 -0.02 -0.05 -0.00 -0.03 -0.02 0.10 -0.00 0.06 0.04 0.03 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.02 0.00 0.04 0.05 -0.02 -0.02 0.06 0.05 -0.01 0.03 0.17 0.12 0.10 0.15 0.11 -0.01 0.10 0.03 -0.00 0.02 0.02 0.01 0.03 0.01 ]
T [ 0.00 0.01 0.00 0.02 -0.01 -0.02 -0.04 -0.08 -0.02 -0.05 0.06 -0.01 -0.03 -0.06 0.02 -0.03 0.00 -0.02 -0.04 -0.01 0.03 -0.03 0.02 0.01 -0.01 -0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages