Detailed information of deep learning profile BP000068.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in GM12864 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000068.1
Cell line/tissue: GM12864
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DRB
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.08 -0.00 0.01 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.10 0.18 0.00 0.06 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.08 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.18 0.08 0.06 0.17 0.10 0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4492 3981 3773 5335 6505 4981 3826 4552 3704 4096 4797 4821 4830 4961 4407 3146 4380 5542 1996 854 11638 1649 3186 15114 341 5847 1772 489 1215 3551 6733 2451 3368 6284 3767 5369 4361 5059 4580 4396 4948 5686 4483 4863 5092 5097 5133 5002 5053 5013 ]
C [ 4634 3696 5078 6062 4405 4141 3705 4862 7996 7080 5909 5498 5331 4807 5384 6516 4747 2508 14872 18245 1548 10442 7177 631 123 234 870 381 2034 12297 2423 9136 5991 4735 4278 4223 4138 5164 5842 6671 5817 4561 5188 4891 4718 4899 4747 4957 5092 4874 ]
G [ 4974 6682 6488 3897 4745 4675 4479 4591 3405 3668 4395 4822 4636 4275 4911 3314 6117 8082 1636 400 2942 6900 1986 2426 19128 13298 11456 18359 14614 1675 8879 5347 2761 5738 5294 4683 7506 5312 5308 3935 4174 5207 5299 5288 5174 4907 4889 5304 5198 5209 ]
T [ 5723 5464 4484 4529 4168 6026 7813 5818 4718 4979 4722 4682 5026 5780 5121 6847 4579 3691 1319 324 3695 832 7474 1652 231 444 5725 594 1960 2300 1788 2889 7703 3066 6484 5548 3818 4288 4093 4821 4884 4369 4853 4781 4839 4920 5054 4560 4480 4727 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.02 -0.02 0.02 -0.01 -0.04 0.04 -0.03 -0.02 0.09 -0.06 0.03 -0.07 -0.06 -0.05 -0.02 0.02 -0.02 -0.01 0.03 -0.01 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.02 0.05 0.04 -0.01 0.13 0.19 -0.01 0.12 0.05 -0.01 -0.02 -0.05 0.00 -0.03 -0.02 0.12 -0.01 0.06 0.04 0.03 0.02 0.02 0.01 0.02 ]
G [ 0.01 0.01 0.02 0.00 0.04 0.06 -0.03 -0.02 0.07 0.05 -0.01 0.03 0.19 0.13 0.11 0.17 0.12 -0.01 0.12 0.04 -0.00 0.03 0.03 0.01 0.04 0.02 ]
T [ 0.00 0.01 0.01 0.02 -0.01 -0.02 -0.05 -0.09 -0.02 -0.06 0.06 -0.03 -0.04 -0.06 0.02 -0.04 0.01 -0.02 -0.05 -0.01 0.03 -0.03 0.02 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 946

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages