Detailed information of deep learning profile BP000067.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in GM12801 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000067.1
Cell line/tissue: GM12801
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DQY
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.07 -0.00 0.11 0.19 0.05 0.06 0.16 -0.00 -0.00 0.01 0.01 -0.00 -0.00 0.03 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.04 -0.00 0.11 -0.00 -0.00 0.00 -0.00 0.00 -0.00 0.01 0.07 -0.00 0.19 0.11 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.02 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.10 -0.01 -0.00 0.04 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 982 964 925 1203 1097 1111 1077 1049 850 1122 1053 830 846 796 1245 1519 405 1930 314 153 404 338 30 1727 75 30 168 1806 116 449 34 243 676 1063 2064 1237 1412 1135 894 887 1161 1050 1430 2252 1546 697 909 832 1359 1371 ]
C [ 1293 1397 1490 1166 1101 1297 1271 1310 1352 633 575 1129 1307 2174 1006 1456 1356 513 1485 2504 138 3952 4615 2583 2753 4598 253 303 1393 629 27 214 2278 1854 603 1215 964 1035 1075 1039 796 622 1148 1080 1187 1267 772 1911 1903 1230 ]
G [ 1294 1206 1223 1191 1164 1182 1210 1542 896 1753 2142 1724 1420 790 941 927 1145 1642 2460 145 3627 205 19 203 49 27 124 1991 3023 179 4600 3873 422 919 1550 1172 1131 1371 1675 1674 1926 2388 1177 637 869 996 1786 1374 797 1214 ]
T [ 1147 1149 1078 1156 1354 1126 1158 815 1618 1208 946 1033 1143 956 1524 814 1810 631 457 1914 547 221 52 203 1839 61 4171 616 184 3459 55 386 1340 880 499 1092 1209 1175 1072 1116 833 656 961 747 1114 1756 1249 599 657 901 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.00 0.03 -0.05 0.04 -0.03 -0.09 -0.02 -0.02 -0.07 0.02 -0.07 -0.06 -0.07 0.06 -0.06 -0.06 -0.08 -0.03 -0.02 -0.00 0.04 0.00 0.02 -0.00 0.00 ]
C [ 0.01 0.04 -0.01 0.01 0.02 -0.02 0.02 0.14 -0.06 0.13 0.19 0.09 0.12 0.16 0.01 -0.03 0.04 0.08 -0.02 -0.04 0.08 0.03 -0.00 0.02 0.00 0.01 0.00 ]
G [ 0.02 -0.00 0.00 0.01 0.02 0.03 0.07 -0.07 0.15 -0.04 -0.05 0.02 -0.05 -0.02 -0.01 0.04 0.12 -0.04 0.20 0.13 -0.04 0.03 0.06 0.02 0.02 0.02 0.03 ]
T [ 0.01 -0.00 0.02 -0.02 0.04 -0.02 -0.02 0.04 -0.03 -0.04 -0.06 -0.09 0.04 -0.05 0.11 -0.03 -0.05 0.05 -0.07 -0.02 0.03 -0.03 -0.05 0.01 -0.00 0.00 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 47

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages