Detailed information of deep learning profile BP000065.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in Caco-2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000065.1
Cell line/tissue: Caco-2
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DQN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.01 0.07 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.17 0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.08 0.00 0.03 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.18 0.08 0.06 0.16 0.10 0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.00 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 5239 4789 4490 6149 7669 5806 4505 5251 4435 4925 5541 5825 5599 5837 5149 3681 5091 6309 2475 1131 13853 1888 3662 18126 353 7204 2104 606 1163 4538 7886 2853 3833 7396 4387 6354 5048 6019 5270 5165 5898 6764 5180 5817 6141 6132 6038 5985 5796 5777 ]
C [ 5612 4475 5983 7065 5247 4944 4319 5760 9017 7921 7164 6427 6272 5684 6401 7800 5245 2973 17209 21243 1705 11958 9111 623 123 233 922 355 2087 14590 2661 10900 7347 5460 4968 4808 4851 6125 7039 8043 6773 5301 6056 5636 5393 5623 5703 5741 5870 5894 ]
G [ 5935 7511 7556 4681 5423 5619 5421 5548 4118 4543 5200 5513 5395 4978 5706 3758 7335 9543 1941 500 3370 8511 2254 2695 22501 15444 13242 21680 17786 1657 10708 6187 3148 6922 6292 5508 8998 6222 6177 4426 4766 6129 6465 6251 6176 5754 5649 6174 6341 6114 ]
T [ 6432 6443 5189 5323 4879 6849 8973 6659 5648 5829 5313 5453 5952 6719 5962 7979 5547 4393 1593 344 4290 861 8191 1774 241 337 6950 577 2182 2433 1963 3278 8890 3440 7571 6548 4321 4852 4732 5584 5781 5024 5517 5514 5508 5709 5828 5318 5211 5433 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.01 -0.02 -0.02 0.02 -0.01 -0.03 0.03 -0.02 -0.01 0.09 -0.05 0.04 -0.06 -0.06 -0.05 -0.01 0.02 -0.02 -0.02 0.02 -0.02 0.01 -0.01 0.00 ]
C [ 0.03 0.02 0.02 0.03 0.05 0.04 -0.01 0.12 0.18 -0.01 0.12 0.06 -0.00 -0.02 -0.06 -0.00 -0.03 -0.02 0.11 -0.01 0.07 0.04 0.03 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.01 0.02 0.00 0.04 0.06 -0.02 -0.02 0.07 0.05 -0.01 0.03 0.18 0.13 0.11 0.17 0.12 -0.01 0.11 0.04 -0.00 0.03 0.02 0.01 0.04 0.02 ]
T [ -0.00 -0.00 0.01 0.00 0.02 -0.01 -0.02 -0.05 -0.09 -0.02 -0.05 0.06 -0.02 -0.04 -0.06 0.02 -0.04 0.00 -0.03 -0.05 -0.01 0.02 -0.03 0.02 0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 187

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages