Detailed information of deep learning profile BP000063.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in BE2C using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000063.1
Cell line/tissue: BE2C
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DQD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 0.00 0.08 0.14 0.05 0.07 0.15 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 0.00 0.07 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 0.00 0.14 0.08 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.01 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4800 4578 4737 5146 4997 4847 4906 4989 4653 5213 4786 4210 4464 3986 5753 6538 3254 7653 3236 2017 2389 2014 749 5435 476 265 1823 7290 914 4053 423 1472 3820 4867 6841 5209 5936 5287 4871 4858 5082 4909 5918 7915 6065 4391 4791 4465 5808 5577 ]
C [ 5464 5693 5479 5026 5170 5575 5469 5524 5459 4423 4267 5648 5470 7687 4910 5646 6134 3056 5613 9195 1837 14991 18514 11732 13894 19780 2597 2043 7394 3100 529 1772 8324 6206 3436 5176 4482 4888 4990 4536 3974 3620 4884 4807 5079 4770 4072 6890 6620 5255 ]
G [ 5171 5239 5145 5179 5107 4942 5100 5376 4889 5840 6791 5991 5270 4517 4317 4536 4876 6074 9100 2610 12242 2158 575 976 337 134 585 7992 10285 1770 18321 15067 2806 4906 7107 5623 4973 5551 5627 6192 7203 8245 4998 3894 4368 4686 6438 5269 3936 4954 ]
T [ 5155 5080 5229 5239 5316 5226 5115 4701 5589 5114 4746 4741 5386 4400 5610 3870 6326 3807 2641 6768 4122 1427 752 2447 5883 411 15585 3265 1997 11667 1317 2279 5640 4611 3206 4582 5199 4864 5102 5004 4331 3816 4790 3974 5078 6743 5289 3966 4226 4804 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.03 0.02 -0.01 -0.05 -0.02 0.00 -0.04 0.01 -0.06 -0.04 -0.03 0.05 -0.06 -0.02 -0.07 -0.04 -0.02 -0.01 0.02 0.00 0.01 0.00 ]
C [ 0.01 0.03 0.01 0.02 0.02 -0.01 0.03 0.10 -0.01 0.10 0.14 0.09 0.11 0.15 0.02 -0.02 0.04 0.05 -0.03 -0.03 0.05 0.03 -0.00 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.02 0.04 0.06 -0.01 0.10 -0.02 -0.04 -0.01 -0.06 -0.03 -0.02 0.04 0.10 -0.02 0.15 0.10 -0.01 0.03 0.04 0.02 0.01 0.01 ]
T [ -0.00 -0.01 0.01 -0.02 0.02 -0.02 -0.02 0.02 -0.01 -0.05 -0.05 -0.06 0.03 -0.05 0.08 -0.02 -0.02 0.03 -0.03 -0.01 0.02 -0.01 -0.02 -0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 119

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 111

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages