Detailed information of deep learning profile BP000063.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in BE2C using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000063.1
Cell line/tissue: BE2C
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DQD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.01 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.08 0.14 0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.07 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.15 0.07 0.05 0.14 0.08 0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4804 4226 3966 5289 6743 5078 3974 4790 3816 4331 5004 5102 4864 5199 4582 3206 4611 5640 2279 1317 11667 1997 3265 15585 411 5883 2447 752 1427 4122 6768 2641 3807 6326 3870 5610 4400 5386 4741 4746 5114 5589 4701 5115 5226 5316 5239 5229 5080 5155 ]
C [ 4954 3936 5269 6438 4686 4368 3894 4998 8245 7203 6192 5627 5551 4973 5623 7107 4906 2806 15067 18321 1770 10285 7992 585 134 337 976 575 2158 12242 2610 9100 6074 4876 4536 4317 4517 5270 5991 6791 5840 4889 5376 5100 4942 5107 5179 5145 5239 5171 ]
G [ 5255 6620 6890 4072 4770 5079 4807 4884 3620 3974 4536 4990 4888 4482 5176 3436 6206 8324 1772 529 3100 7394 2043 2597 19780 13894 11732 18514 14991 1837 9195 5613 3056 6134 5646 4910 7687 5470 5648 4267 4423 5459 5524 5469 5575 5170 5026 5479 5693 5464 ]
T [ 5577 5808 4465 4791 4391 6065 7915 5918 4909 5082 4858 4871 5287 5936 5209 6841 4867 3820 1472 423 4053 914 7290 1823 265 476 5435 749 2014 2389 2017 3236 7653 3254 6538 5753 3986 4464 4210 4786 5213 4653 4989 4906 4847 4997 5146 4737 4578 4800 ]

Hypothetical CWM

   
A [ 0.00 0.00 -0.00 -0.02 -0.01 0.02 -0.01 -0.03 0.03 -0.02 -0.02 0.08 -0.05 0.03 -0.06 -0.05 -0.05 -0.01 0.02 -0.02 -0.02 0.02 -0.02 0.01 -0.01 -0.00 ]
C [ 0.01 0.01 0.02 0.04 0.03 -0.01 0.10 0.15 -0.02 0.10 0.04 -0.02 -0.03 -0.06 -0.01 -0.04 -0.02 0.10 -0.01 0.06 0.04 0.02 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 -0.00 0.03 0.05 -0.03 -0.03 0.05 0.04 -0.02 0.02 0.15 0.11 0.09 0.14 0.10 -0.01 0.10 0.03 -0.01 0.02 0.02 0.01 0.03 0.01 ]
T [ 0.00 0.01 0.00 0.02 -0.01 -0.02 -0.04 -0.07 -0.02 -0.06 0.05 -0.03 -0.04 -0.06 0.01 -0.04 0.00 -0.02 -0.05 -0.01 0.02 -0.03 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 119

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 111

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000031.1 CTCF ENCSR000DKP GM10248 Homo sapiens MA0139.2
BP000032.1 CTCF ENCSR000DKR GM10266 Homo sapiens MA0139.2
BP000033.1 CTCF ENCSR000DKV GM12878 Homo sapiens MA0139.2
BP000034.1 CTCF ENCSR000DKZ GM13976 Homo sapiens MA0139.2
BP000035.1 CTCF ENCSR000DLB GM13977 Homo sapiens MA0139.2
BP000036.1 CTCF ENCSR000DLG GM20000 Homo sapiens MA0139.2
BP000037.1 CTCF ENCSR000DLK H1 Homo sapiens MA0139.2
BP000038.1 CTCF ENCSR000DLO HeLa-S3 Homo sapiens MA0139.2
BP000039.1 CTCF ENCSR000DLS HepG2 Homo sapiens MA0139.2
BP000040.1 CTCF ENCSR000DLW endothelial cell of umbilical vein Homo sapiens MA0139.2
Showing 10 profiles of page 4 from 45 pages