Detailed information of deep learning profile BP000062.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in fibroblast of the aortic adventitia using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000062.1
Cell line/tissue: fibroblast of the aortic adventitia
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DPY
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 0.00 0.09 0.14 0.05 0.07 0.17 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 0.00 0.06 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.17 0.10 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.01 -0.00 0.08 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 5061 4890 4862 5315 5366 5026 5112 5149 4768 5164 5129 4414 4546 4259 5965 6703 3382 7683 3200 2080 2536 1994 853 5271 488 223 1557 7615 766 3835 254 1272 3912 4966 7195 5462 6424 5626 5018 4878 5288 5049 6185 8603 6456 4326 4832 4702 5761 6001 ]
C [ 5501 5517 5643 5261 5138 5552 5739 5655 5537 4542 4232 5672 5806 7883 5146 5788 6265 3362 5886 9470 1996 15303 18916 12076 14105 20450 2502 1930 7493 3567 344 1542 8691 6466 3270 5082 4415 4782 5073 4644 3860 3426 4875 4679 4933 4915 4019 6729 7049 5247 ]
G [ 5311 5351 5253 5148 5156 5073 4989 5481 4862 6136 6843 6185 5419 4372 4295 4485 4829 6236 9008 2664 12097 2267 658 1195 264 106 598 8243 11068 1449 19408 16137 2602 4970 7429 6075 5039 5668 5650 6591 7477 8775 5320 3808 4491 4723 6578 5588 4027 4986 ]
T [ 5261 5376 5376 5410 5474 5483 5294 4849 5967 5292 4930 4863 5363 4620 5728 4158 6658 3853 3040 6920 4505 1570 707 2592 6277 355 16477 3346 1807 12283 1128 2183 5929 4732 3240 4515 5256 5058 5393 5021 4509 3884 4754 4044 5254 7170 5705 4115 4297 4900 ]

Hypothetical CWM

   
A [ 0.00 0.02 -0.03 0.02 -0.01 -0.05 -0.03 -0.01 -0.05 0.00 -0.07 -0.04 -0.04 0.06 -0.06 -0.03 -0.08 -0.04 -0.02 -0.01 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.01 0.02 0.02 -0.01 0.03 0.10 -0.01 0.11 0.15 0.10 0.12 0.17 0.02 -0.03 0.04 0.07 -0.04 -0.04 0.05 0.03 -0.00 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.02 0.03 0.05 -0.01 0.10 -0.02 -0.04 -0.00 -0.07 -0.03 -0.03 0.05 0.11 -0.03 0.18 0.12 -0.02 0.03 0.05 0.02 0.01 0.01 0.02 ]
T [ 0.01 -0.02 0.02 -0.02 -0.02 0.01 -0.01 -0.05 -0.05 -0.06 0.04 -0.06 0.09 -0.02 -0.03 0.04 -0.03 -0.02 0.02 -0.02 -0.03 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1359

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 607

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages