Detailed information of deep learning profile BP000062.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in fibroblast of the aortic adventitia using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000062.1
Cell line/tissue: fibroblast of the aortic adventitia
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DPY
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.08 -0.00 0.01 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.10 0.17 -0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.06 0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.17 0.07 0.05 0.14 0.09 0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4900 4297 4115 5705 7170 5254 4044 4754 3884 4509 5021 5393 5058 5256 4515 3240 4732 5929 2183 1128 12283 1807 3346 16477 355 6277 2592 707 1570 4505 6920 3040 3853 6658 4158 5728 4620 5363 4863 4930 5292 5967 4849 5294 5483 5474 5410 5376 5376 5261 ]
C [ 4986 4027 5588 6578 4723 4491 3808 5320 8775 7477 6591 5650 5668 5039 6075 7429 4970 2602 16137 19408 1449 11068 8243 598 106 264 1195 658 2267 12097 2664 9008 6236 4829 4485 4295 4372 5419 6185 6843 6136 4862 5481 4989 5073 5156 5148 5253 5351 5311 ]
G [ 5247 7049 6729 4019 4915 4933 4679 4875 3426 3860 4644 5073 4782 4415 5082 3270 6466 8691 1542 344 3567 7493 1930 2502 20450 14105 12076 18916 15303 1996 9470 5886 3362 6265 5788 5146 7883 5806 5672 4232 4542 5537 5655 5739 5552 5138 5261 5643 5517 5501 ]
T [ 6001 5761 4702 4832 4326 6456 8603 6185 5049 5288 4878 5018 5626 6424 5462 7195 4966 3912 1272 254 3835 766 7615 1557 223 488 5271 853 1994 2536 2080 3200 7683 3382 6703 5965 4259 4546 4414 5129 5164 4768 5149 5112 5026 5366 5315 4862 4890 5061 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.03 -0.02 0.02 -0.02 -0.03 0.04 -0.03 -0.02 0.09 -0.06 0.04 -0.06 -0.05 -0.05 -0.01 0.01 -0.02 -0.02 0.02 -0.02 0.01 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.03 -0.02 0.12 0.18 -0.03 0.11 0.05 -0.03 -0.03 -0.07 -0.00 -0.04 -0.02 0.10 -0.01 0.05 0.03 0.02 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 -0.00 0.03 0.05 -0.04 -0.04 0.07 0.04 -0.03 0.02 0.17 0.12 0.10 0.15 0.11 -0.01 0.10 0.03 -0.01 0.02 0.02 0.01 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.01 -0.02 -0.04 -0.08 -0.03 -0.06 0.06 -0.04 -0.04 -0.07 0.00 -0.05 -0.01 -0.03 -0.05 -0.01 0.02 -0.03 0.02 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1359

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 607

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000021.1 CTCF ENCSR000BHV A549 Homo sapiens MA0139.2
BP000022.1 CTCF ENCSR000BHW A549 Homo sapiens MA0139.2
BP000023.1 CTCF ENCSR000BIE HepG2 Homo sapiens MA0139.2
BP000024.1 CTCF ENCSR000BLX SK-N-SH Homo sapiens MA0139.2
BP000025.1 CTCF ENCSR000BNH H1 Homo sapiens MA0139.2
BP000026.1 CTCF ENCSR000BNO T47D Homo sapiens MA0139.2
BP000027.1 CTCF ENCSR000BPJ K562 Homo sapiens MA0139.2
BP000028.1 CTCF ENCSR000BQE Ishikawa Homo sapiens MA0139.2
BP000029.1 CTCF ENCSR000BSE HCT116 Homo sapiens MA0139.2
BP000030.1 CTCF ENCSR000DKN H54 Homo sapiens MA0139.2
Showing 10 profiles of page 3 from 45 pages