Detailed information of deep learning profile BP000061.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in AG10803 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000061.1
Cell line/tissue: AG10803
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DPV
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.08 0.15 0.00 0.05 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.06 0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.15 0.07 0.05 0.13 0.09 0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 5204 4597 4405 5865 7517 5601 4332 5115 4245 4826 5367 5823 5352 5455 4775 3522 5067 6012 2491 1157 12596 2003 3746 17054 430 6812 2948 884 1642 4732 7376 3109 4147 6938 4445 6086 4903 5729 5120 5285 5735 6235 5141 5537 5697 5839 5656 5693 5650 5546 ]
C [ 5473 4330 5892 7001 4941 4742 4161 5685 9113 7912 6980 5994 5969 5419 6684 7994 5205 2933 16528 20523 1751 11321 8702 718 141 377 1295 638 2266 13141 2722 9746 6764 5205 4875 4618 4611 5793 6569 7383 6456 5226 5814 5410 5427 5434 5469 5623 5713 5675 ]
G [ 5591 7180 7337 4424 5245 5572 5167 5233 3755 4242 4981 5410 5162 4835 5428 3528 6854 9163 1942 422 3745 8192 2241 2777 21607 14686 12784 19994 16391 1930 10200 6199 3468 6743 6039 5440 8493 6174 6088 4477 4779 5973 6100 6166 6027 5545 5771 6067 5939 5922 ]
T [ 6202 6363 4836 5180 4767 6555 8810 6437 5357 5490 5142 5243 5987 6761 5583 7426 5344 4362 1509 368 4378 954 7781 1921 292 595 5443 954 2171 2667 2172 3416 8091 3584 7111 6326 4463 4774 4693 5325 5500 5036 5415 5357 5319 5652 5574 5087 5168 5327 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.02 -0.01 0.02 -0.00 -0.03 0.03 -0.02 -0.01 0.08 -0.04 0.04 -0.04 -0.04 -0.04 -0.01 0.02 -0.01 -0.01 0.02 -0.01 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.04 -0.00 0.10 0.16 -0.01 0.10 0.05 -0.01 -0.03 -0.06 0.00 -0.03 -0.02 0.10 -0.00 0.05 0.03 0.02 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.02 0.00 0.03 0.05 -0.02 -0.02 0.06 0.04 -0.02 0.02 0.15 0.11 0.09 0.14 0.11 -0.00 0.10 0.04 -0.00 0.02 0.02 0.01 0.03 0.02 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.00 -0.01 -0.04 -0.06 -0.02 -0.05 0.05 -0.03 -0.03 -0.06 0.01 -0.03 0.00 -0.02 -0.04 -0.00 0.03 -0.02 0.02 0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 256

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages