Detailed information of deep learning profile BP000061.1

  1. Home
  2. Deep Learning Profile > BP000061.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in AG10803 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000061.1
Cell line/tissue: AG10803
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DPV
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 0.00 0.09 0.13 0.05 0.07 0.15 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 0.00 0.06 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.05 0.00 0.15 0.08 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 5327 5168 5087 5574 5652 5319 5357 5415 5036 5500 5325 4693 4774 4463 6326 7111 3584 8091 3416 2172 2667 2171 954 5443 595 292 1921 7781 954 4378 368 1509 4362 5344 7426 5583 6761 5987 5243 5142 5490 5357 6437 8810 6555 4767 5180 4836 6363 6202 ]
C [ 5922 5939 6067 5771 5545 6027 6166 6100 5973 4779 4477 6088 6174 8493 5440 6039 6743 3468 6199 10200 1930 16391 19994 12784 14686 21607 2777 2241 8192 3745 422 1942 9163 6854 3528 5428 4835 5162 5410 4981 4242 3755 5233 5167 5572 5245 4424 7337 7180 5591 ]
G [ 5675 5713 5623 5469 5434 5427 5410 5814 5226 6456 7383 6569 5793 4611 4618 4875 5205 6764 9746 2722 13141 2266 638 1295 377 141 718 8702 11321 1751 20523 16528 2933 5205 7994 6684 5419 5969 5994 6980 7912 9113 5685 4161 4742 4941 7001 5892 4330 5473 ]
T [ 5546 5650 5693 5656 5839 5697 5537 5141 6235 5735 5285 5120 5729 4903 6086 4445 6938 4147 3109 7376 4732 1642 884 2948 6812 430 17054 3746 2003 12596 1157 2491 6012 5067 3522 4775 5455 5352 5823 5367 4826 4245 5115 4332 5601 7517 5865 4405 4597 5204 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 0.02 -0.02 0.03 -0.00 -0.04 -0.02 0.00 -0.03 0.01 -0.06 -0.03 -0.03 0.05 -0.05 -0.02 -0.06 -0.04 -0.01 -0.00 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.02 0.03 0.01 0.02 0.02 -0.00 0.04 0.10 -0.00 0.11 0.14 0.09 0.11 0.15 0.02 -0.02 0.04 0.06 -0.02 -0.02 0.05 0.03 0.00 0.02 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.02 0.03 0.05 -0.00 0.10 -0.02 -0.03 0.00 -0.06 -0.03 -0.01 0.05 0.10 -0.01 0.16 0.10 -0.00 0.04 0.05 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.01 0.02 -0.01 -0.01 0.02 -0.01 -0.04 -0.04 -0.04 0.04 -0.04 0.08 -0.01 -0.02 0.03 -0.03 -0.00 0.02 -0.01 -0.02 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 256

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000041.1 CTCF ENCSR000DMA K562 Homo sapiens MA0139.2
BP000042.1 CTCF ENCSR000DMC kidney Homo sapiens MA0139.2
BP000043.1 CTCF ENCSR000DME LNCaP clone FGC Homo sapiens MA0139.2
BP000044.1 CTCF ENCSR000DMF LNCaP clone FGC Homo sapiens MA0139.2
BP000045.1 CTCF ENCSR000DMH lung Homo sapiens MA0139.2
BP000046.1 CTCF ENCSR000DML MCF-7 Homo sapiens MA0139.2
BP000047.1 CTCF ENCSR000DMO MCF-7 Homo sapiens MA0139.2
BP000048.1 CTCF ENCSR000DMR MCF-7 Homo sapiens MA0139.2
BP000049.1 CTCF ENCSR000DMS MCF-7 Homo sapiens MA0139.2
BP000050.1 CTCF ENCSR000DMV MCF-7 Homo sapiens MA0139.2
Showing 10 profiles of page 5 from 45 pages