Detailed information of deep learning profile BP000060.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in AG09319 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000060.1
Cell line/tissue: AG09319
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DPS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.01 -0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.07 0.00 0.14 0.22 0.08 0.10 0.23 0.00 -0.00 0.02 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.04 -0.00 0.11 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.07 -0.00 0.23 0.12 -0.00 0.01 0.02 0.00 ]
T [ -0.01 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.02 -0.00 0.10 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 4960 4817 4845 5565 5375 5144 5120 5188 4575 5315 5274 4377 4441 4042 6267 7324 2843 8716 2726 1512 2086 1824 432 5976 357 205 1597 7515 820 3609 349 1537 4069 5144 7287 5472 6338 5542 5016 4868 5462 5313 6181 8279 6364 4481 5016 4825 5762 5993 ]
C [ 5513 5625 5785 5164 5031 5537 5698 5655 5590 4124 3809 5576 5724 8446 4755 5543 6249 2483 5890 10145 1284 16952 19974 12182 13304 20571 2319 2000 7751 3412 395 1839 8763 6593 3432 5275 4551 4932 5069 4740 4096 3658 5104 4886 5114 5015 4132 6781 6889 5300 ]
G [ 5378 5342 5143 5058 5001 4974 5083 5696 4720 6501 7431 6441 5650 4217 4221 4499 5032 6684 10330 1839 13958 1525 297 983 239 96 646 8248 10846 1449 19450 15478 2698 4750 7173 5872 5004 5543 5753 6544 7137 8115 5159 3895 4420 4639 6392 5385 4128 4996 ]
T [ 5368 5435 5446 5432 5812 5564 5318 4680 6334 5279 4705 4825 5404 4514 5976 3853 7095 3336 2273 7723 3891 918 516 2078 7319 347 16657 3456 1802 12749 1025 2365 5689 4732 3327 4600 5326 5202 5381 5067 4524 4133 4775 4159 5321 7084 5679 4228 4440 4930 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.05 0.04 -0.02 -0.08 -0.04 -0.00 -0.06 0.02 -0.10 -0.06 -0.05 0.08 -0.08 -0.03 -0.10 -0.05 -0.02 -0.01 0.02 0.01 0.01 0.00 ]
C [ 0.02 0.05 0.01 0.03 0.03 -0.02 0.05 0.17 -0.02 0.17 0.22 0.14 0.17 0.24 0.03 -0.03 0.06 0.09 -0.05 -0.03 0.07 0.05 0.00 0.02 0.02 0.02 ]
G [ 0.03 0.01 0.02 0.02 0.04 0.06 0.09 -0.03 0.16 -0.04 -0.06 -0.01 -0.10 -0.05 -0.02 0.06 0.15 -0.03 0.24 0.15 -0.01 0.05 0.07 0.03 0.02 0.02 ]
T [ 0.00 -0.01 0.01 -0.03 0.03 -0.03 -0.03 0.03 -0.02 -0.07 -0.07 -0.08 0.06 -0.08 0.12 -0.02 -0.03 0.05 -0.05 -0.02 0.02 -0.02 -0.03 -0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 731

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 118

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages