Detailed information of deep learning profile BP000060.1

  1. Home
  2. Deep Learning Profile > BP000060.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in AG09319 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000060.1
Cell line/tissue: AG09319
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DPS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.10 -0.00 0.02 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.01 ]
C [ 0.00 0.02 0.01 -0.00 0.12 0.23 -0.00 0.07 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.11 -0.00 0.04 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.02 -0.00 0.00 0.23 0.10 0.08 0.22 0.14 0.00 0.07 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.01 -0.01 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 4930 4440 4228 5679 7084 5321 4159 4775 4133 4524 5067 5381 5202 5326 4600 3327 4732 5689 2365 1025 12749 1802 3456 16657 347 7319 2078 516 918 3891 7723 2273 3336 7095 3853 5976 4514 5404 4825 4705 5279 6334 4680 5318 5564 5812 5432 5446 5435 5368 ]
C [ 4996 4128 5385 6392 4639 4420 3895 5159 8115 7137 6544 5753 5543 5004 5872 7173 4750 2698 15478 19450 1449 10846 8248 646 96 239 983 297 1525 13958 1839 10330 6684 5032 4499 4221 4217 5650 6441 7431 6501 4720 5696 5083 4974 5001 5058 5143 5342 5378 ]
G [ 5300 6889 6781 4132 5015 5114 4886 5104 3658 4096 4740 5069 4932 4551 5275 3432 6593 8763 1839 395 3412 7751 2000 2319 20571 13304 12182 19974 16952 1284 10145 5890 2483 6249 5543 4755 8446 5724 5576 3809 4124 5590 5655 5698 5537 5031 5164 5785 5625 5513 ]
T [ 5993 5762 4825 5016 4481 6364 8279 6181 5313 5462 4868 5016 5542 6338 5472 7287 5144 4069 1537 349 3609 820 7515 1597 205 357 5976 432 1824 2086 1512 2726 8716 2843 7324 6267 4042 4441 4377 5274 5315 4575 5188 5120 5144 5375 5565 4845 4817 4960 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.00 -0.03 -0.02 0.02 -0.02 -0.05 0.05 -0.03 -0.02 0.12 -0.08 0.06 -0.08 -0.07 -0.07 -0.02 0.03 -0.03 -0.03 0.03 -0.03 0.01 -0.01 0.00 ]
C [ 0.02 0.02 0.03 0.07 0.05 -0.01 0.15 0.24 -0.03 0.15 0.06 -0.02 -0.05 -0.10 -0.01 -0.06 -0.04 0.16 -0.03 0.09 0.06 0.04 0.02 0.02 0.01 0.03 ]
G [ 0.02 0.02 0.02 0.00 0.05 0.07 -0.03 -0.05 0.09 0.06 -0.03 0.03 0.24 0.17 0.14 0.22 0.17 -0.02 0.17 0.05 -0.02 0.03 0.03 0.01 0.05 0.02 ]
T [ 0.00 0.01 0.01 0.02 -0.01 -0.02 -0.05 -0.10 -0.03 -0.08 0.08 -0.05 -0.06 -0.10 0.02 -0.06 -0.00 -0.04 -0.08 -0.02 0.04 -0.05 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 731

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 118

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000041.1 CTCF ENCSR000DMA K562 Homo sapiens MA0139.2
BP000042.1 CTCF ENCSR000DMC kidney Homo sapiens MA0139.2
BP000043.1 CTCF ENCSR000DME LNCaP clone FGC Homo sapiens MA0139.2
BP000044.1 CTCF ENCSR000DMF LNCaP clone FGC Homo sapiens MA0139.2
BP000045.1 CTCF ENCSR000DMH lung Homo sapiens MA0139.2
BP000046.1 CTCF ENCSR000DML MCF-7 Homo sapiens MA0139.2
BP000047.1 CTCF ENCSR000DMO MCF-7 Homo sapiens MA0139.2
BP000048.1 CTCF ENCSR000DMR MCF-7 Homo sapiens MA0139.2
BP000049.1 CTCF ENCSR000DMS MCF-7 Homo sapiens MA0139.2
BP000050.1 CTCF ENCSR000DMV MCF-7 Homo sapiens MA0139.2
Showing 10 profiles of page 5 from 45 pages