Detailed information of deep learning profile BP000058.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in AG04450 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000058.1
Cell line/tissue: AG04450
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DPM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 0.00 0.09 0.15 0.06 0.08 0.18 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 0.00 0.07 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.17 0.10 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.01 0.01 -0.00 0.08 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 5063 4990 5025 5398 5369 5133 5172 5151 4758 5210 5126 4521 4705 4229 5953 6926 3495 7898 3322 2088 2503 1892 793 5049 466 240 1611 7598 797 4056 344 1377 4021 4964 7251 5461 6288 5718 5028 4934 5438 5064 6304 8617 6304 4468 5045 4772 6097 6059 ]
C [ 5720 5743 5782 5452 5416 5813 5847 5850 5761 4689 4529 5919 5836 8055 5270 5905 6474 3283 5814 9830 1936 15982 19533 12825 14540 20887 2538 1949 7862 3615 422 1803 8955 6790 3389 5357 4607 4961 5303 4913 4037 3623 5100 4808 5386 5131 4174 7284 7112 5297 ]
G [ 5428 5487 5406 5285 5254 5172 5325 5607 5128 6227 6897 6221 5485 4629 4543 4634 5029 6406 9574 2795 12507 2281 576 1105 277 149 578 8607 11131 1492 19686 16198 2701 5118 7601 6073 5225 5714 5830 6561 7651 8978 5319 4006 4619 4639 6867 5488 4179 5254 ]
T [ 5425 5416 5423 5501 5597 5518 5292 5028 5989 5510 5084 4975 5610 4723 5870 4171 6638 4049 2926 6923 4690 1481 734 2657 6353 360 16909 3482 1846 12473 1184 2258 5959 4764 3395 4745 5516 5243 5475 5228 4510 3971 4913 4205 5327 7398 5550 4092 4248 5026 ]

Hypothetical CWM

   
A [ 0.01 0.02 -0.03 0.02 -0.01 -0.05 -0.02 -0.01 -0.05 0.01 -0.07 -0.04 -0.04 0.06 -0.06 -0.02 -0.08 -0.04 -0.01 -0.01 0.02 0.01 ]
C [ 0.01 0.02 0.02 -0.01 0.04 0.10 -0.02 0.11 0.16 0.10 0.13 0.18 0.02 -0.03 0.05 0.06 -0.04 -0.03 0.05 0.04 0.00 0.02 ]
G [ 0.01 0.01 0.03 0.04 0.06 -0.01 0.10 -0.03 -0.05 -0.01 -0.07 -0.03 -0.03 0.05 0.12 -0.02 0.18 0.12 -0.02 0.04 0.05 0.02 ]
T [ 0.01 -0.02 0.02 -0.01 -0.02 0.01 -0.01 -0.05 -0.05 -0.06 0.04 -0.07 0.10 -0.02 -0.03 0.04 -0.04 -0.02 0.02 -0.02 -0.03 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 725

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 401

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages