Detailed information of deep learning profile BP000058.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in AG04450 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000058.1
Cell line/tissue: AG04450
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DPM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.08 -0.00 0.01 -0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.10 0.17 -0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.07 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.18 0.08 0.06 0.15 0.09 0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 5026 4248 4092 5550 7398 5327 4205 4913 3971 4510 5228 5475 5243 5516 4745 3395 4764 5959 2258 1184 12473 1846 3482 16909 360 6353 2657 734 1481 4690 6923 2926 4049 6638 4171 5870 4723 5610 4975 5084 5510 5989 5028 5292 5518 5597 5501 5423 5416 5425 ]
C [ 5254 4179 5488 6867 4639 4619 4006 5319 8978 7651 6561 5830 5714 5225 6073 7601 5118 2701 16198 19686 1492 11131 8607 578 149 277 1105 576 2281 12507 2795 9574 6406 5029 4634 4543 4629 5485 6221 6897 6227 5128 5607 5325 5172 5254 5285 5406 5487 5428 ]
G [ 5297 7112 7284 4174 5131 5386 4808 5100 3623 4037 4913 5303 4961 4607 5357 3389 6790 8955 1803 422 3615 7862 1949 2538 20887 14540 12825 19533 15982 1936 9830 5814 3283 6474 5905 5270 8055 5836 5919 4529 4689 5761 5850 5847 5813 5416 5452 5782 5743 5720 ]
T [ 6059 6097 4772 5045 4468 6304 8617 6304 5064 5438 4934 5028 5718 6288 5461 7251 4964 4021 1377 344 4056 797 7598 1611 240 466 5049 793 1892 2503 2088 3322 7898 3495 6926 5953 4229 4705 4521 5126 5210 4758 5151 5172 5133 5369 5398 5025 4990 5063 ]

Hypothetical CWM

   
A [ -0.00 -0.03 -0.02 0.02 -0.02 -0.04 0.04 -0.03 -0.02 0.10 -0.07 0.04 -0.06 -0.05 -0.05 -0.01 0.01 -0.02 -0.01 0.02 -0.02 0.01 ]
C [ 0.02 0.05 0.04 -0.02 0.12 0.18 -0.02 0.12 0.05 -0.03 -0.03 -0.07 -0.01 -0.05 -0.03 0.10 -0.01 0.06 0.04 0.03 0.01 0.01 ]
G [ 0.02 0.00 0.04 0.05 -0.03 -0.04 0.06 0.05 -0.03 0.02 0.18 0.13 0.10 0.16 0.11 -0.02 0.10 0.04 -0.01 0.02 0.02 0.01 ]
T [ 0.01 0.02 -0.01 -0.01 -0.04 -0.08 -0.02 -0.06 0.06 -0.04 -0.04 -0.07 0.01 -0.05 -0.01 -0.02 -0.05 -0.01 0.02 -0.03 0.02 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 725

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 401

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000041.1 CTCF ENCSR000DMA K562 Homo sapiens MA0139.2
BP000042.1 CTCF ENCSR000DMC kidney Homo sapiens MA0139.2
BP000043.1 CTCF ENCSR000DME LNCaP clone FGC Homo sapiens MA0139.2
BP000044.1 CTCF ENCSR000DMF LNCaP clone FGC Homo sapiens MA0139.2
BP000045.1 CTCF ENCSR000DMH lung Homo sapiens MA0139.2
BP000046.1 CTCF ENCSR000DML MCF-7 Homo sapiens MA0139.2
BP000047.1 CTCF ENCSR000DMO MCF-7 Homo sapiens MA0139.2
BP000048.1 CTCF ENCSR000DMR MCF-7 Homo sapiens MA0139.2
BP000049.1 CTCF ENCSR000DMS MCF-7 Homo sapiens MA0139.2
BP000050.1 CTCF ENCSR000DMV MCF-7 Homo sapiens MA0139.2
Showing 10 profiles of page 5 from 45 pages