Detailed information of deep learning profile BP000057.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in AG04449 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000057.1
Cell line/tissue: AG04449
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DPG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.08 -0.00 0.02 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.02 0.01 -0.00 0.10 0.18 -0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.08 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.19 0.08 0.06 0.17 0.10 0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 5071 4398 4331 5822 7324 5530 4251 5025 4216 4710 5302 5664 5249 5351 4728 3427 4895 5890 2326 1033 12904 1828 3693 16804 369 6933 2555 706 1322 4548 7386 2895 3855 6948 4199 5912 4748 5596 4942 5101 5493 6236 5001 5428 5695 5702 5543 5592 5548 5405 ]
C [ 5219 4219 5792 6744 4815 4605 4104 5398 8721 7505 6689 5861 5742 5211 6278 7642 4963 2728 16179 20012 1494 11092 8511 655 120 302 1162 544 2146 13108 2605 9898 6621 5172 4671 4541 4572 5694 6551 7308 6417 5046 5728 5229 5143 5327 5264 5488 5580 5420 ]
G [ 5490 7195 7083 4283 5188 5196 4983 5112 3686 4180 4909 5245 5092 4728 5374 3467 6616 8996 1876 485 3380 8091 2145 2702 21134 14176 12412 19893 16395 1783 9949 6018 3215 6483 5860 5225 8244 5908 5834 4338 4518 5807 5863 5847 5819 5354 5452 5844 5755 5791 ]
T [ 6109 6077 4683 5040 4562 6558 8551 6354 5266 5494 4989 5119 5806 6599 5509 7353 5415 4275 1508 359 4111 878 7540 1728 266 478 5760 746 2026 2450 1949 3078 8198 3286 7159 6211 4325 4691 4562 5142 5461 4800 5297 5385 5232 5506 5630 4965 5006 5273 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.03 -0.02 0.02 -0.01 -0.04 0.04 -0.03 -0.02 0.10 -0.06 0.05 -0.06 -0.05 -0.05 -0.01 0.02 -0.03 -0.02 0.02 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.02 0.01 0.03 0.06 0.04 -0.01 0.13 0.19 -0.03 0.12 0.05 -0.02 -0.04 -0.08 -0.01 -0.05 -0.03 0.12 -0.01 0.06 0.04 0.03 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.02 -0.00 0.04 0.06 -0.03 -0.04 0.07 0.05 -0.02 0.03 0.19 0.14 0.11 0.17 0.12 -0.02 0.12 0.04 -0.00 0.03 0.02 0.01 0.04 0.02 ]
T [ -0.00 0.00 0.01 0.00 0.02 -0.00 -0.01 -0.04 -0.08 -0.02 -0.06 0.06 -0.03 -0.04 -0.07 0.01 -0.05 -0.00 -0.03 -0.06 -0.01 0.03 -0.03 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 974

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages