Detailed information of deep learning profile BP000057.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in AG04449 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000057.1
Cell line/tissue: AG04449
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DPG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 0.00 0.10 0.17 0.06 0.08 0.19 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 0.00 0.08 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.18 0.10 -0.00 0.01 0.02 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.02 -0.00 0.08 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 5273 5006 4965 5630 5506 5232 5385 5297 4800 5461 5142 4562 4691 4325 6211 7159 3286 8198 3078 1949 2450 2026 746 5760 478 266 1728 7540 878 4111 359 1508 4275 5415 7353 5509 6599 5806 5119 4989 5494 5266 6354 8551 6558 4562 5040 4683 6077 6109 ]
C [ 5791 5755 5844 5452 5354 5819 5847 5863 5807 4518 4338 5834 5908 8244 5225 5860 6483 3215 6018 9949 1783 16395 19893 12412 14176 21134 2702 2145 8091 3380 485 1876 8996 6616 3467 5374 4728 5092 5245 4909 4180 3686 5112 4983 5196 5188 4283 7083 7195 5490 ]
G [ 5420 5580 5488 5264 5327 5143 5229 5728 5046 6417 7308 6551 5694 4572 4541 4671 5172 6621 9898 2605 13108 2146 544 1162 302 120 655 8511 11092 1494 20012 16179 2728 4963 7642 6278 5211 5742 5861 6689 7505 8721 5398 4104 4605 4815 6744 5792 4219 5219 ]
T [ 5405 5548 5592 5543 5702 5695 5428 5001 6236 5493 5101 4942 5596 4748 5912 4199 6948 3855 2895 7386 4548 1322 706 2555 6933 369 16804 3693 1828 12904 1033 2326 5890 4895 3427 4728 5351 5249 5664 5302 4710 4216 5025 4251 5530 7324 5822 4331 4398 5071 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.03 0.03 -0.01 -0.06 -0.03 -0.00 -0.05 0.01 -0.07 -0.04 -0.03 0.06 -0.06 -0.02 -0.08 -0.04 -0.01 -0.00 0.02 0.00 0.01 0.00 -0.00 ]
C [ 0.02 0.04 0.01 0.02 0.03 -0.00 0.04 0.12 -0.02 0.12 0.17 0.11 0.14 0.19 0.03 -0.02 0.05 0.07 -0.04 -0.03 0.06 0.04 -0.00 0.02 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.03 0.04 0.06 -0.01 0.12 -0.03 -0.05 -0.01 -0.08 -0.04 -0.02 0.05 0.12 -0.03 0.19 0.13 -0.01 0.04 0.06 0.03 0.01 0.02 0.02 ]
T [ 0.00 -0.00 0.01 -0.02 0.02 -0.02 -0.03 0.02 -0.01 -0.05 -0.05 -0.06 0.05 -0.06 0.10 -0.02 -0.03 0.04 -0.04 -0.01 0.02 -0.02 -0.03 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 974

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000041.1 CTCF ENCSR000DMA K562 Homo sapiens MA0139.2
BP000042.1 CTCF ENCSR000DMC kidney Homo sapiens MA0139.2
BP000043.1 CTCF ENCSR000DME LNCaP clone FGC Homo sapiens MA0139.2
BP000044.1 CTCF ENCSR000DMF LNCaP clone FGC Homo sapiens MA0139.2
BP000045.1 CTCF ENCSR000DMH lung Homo sapiens MA0139.2
BP000046.1 CTCF ENCSR000DML MCF-7 Homo sapiens MA0139.2
BP000047.1 CTCF ENCSR000DMO MCF-7 Homo sapiens MA0139.2
BP000048.1 CTCF ENCSR000DMR MCF-7 Homo sapiens MA0139.2
BP000049.1 CTCF ENCSR000DMS MCF-7 Homo sapiens MA0139.2
BP000050.1 CTCF ENCSR000DMV MCF-7 Homo sapiens MA0139.2
Showing 10 profiles of page 5 from 45 pages