Detailed information of deep learning profile BP000056.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000056.1
Cell line/tissue: A549
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DPF
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 0.00 0.11 0.19 0.07 0.09 0.21 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.04 0.00 0.09 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.07 0.00 0.20 0.11 -0.00 0.01 0.02 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.01 -0.00 0.09 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 4709 4408 4678 4871 4875 4656 4705 4715 4328 4873 4715 4125 4218 3822 5613 6482 3048 7556 2868 1609 2101 1765 585 5707 353 220 1565 7057 787 3778 348 1369 3744 4747 6760 5000 5880 5022 4597 4524 5053 4779 5621 7696 5880 4261 4610 4346 5407 5447 ]
C [ 5197 5417 5304 4892 4964 5304 5391 5435 5176 4245 4038 5355 5352 7516 4677 5251 5914 2743 5335 9137 1552 15092 18372 11278 13149 19151 2355 1955 7201 2962 520 1637 8197 6225 3235 4865 4171 4765 4719 4499 3827 3521 4709 4539 4740 4786 3937 6480 6540 5125 ]
G [ 5059 5073 4829 5008 4954 4803 4825 5215 4740 5824 6642 5829 5212 4246 4188 4403 4584 6150 9231 2286 12336 1892 331 806 207 121 532 7532 10087 1540 17888 14634 2541 4565 6709 5578 4864 5299 5502 6084 6852 7783 4928 3680 4316 4443 5946 5160 3799 4733 ]
T [ 4864 4931 5018 5058 5036 5066 4908 4464 5585 4887 4434 4520 5047 4245 5351 3693 6283 3380 2395 6797 3840 1080 541 2038 6120 337 15377 3285 1754 11549 1073 2189 5347 4292 3125 4386 4914 4743 5011 4722 4097 3746 4571 3914 4893 6339 5336 3843 4083 4524 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.04 0.03 -0.02 -0.07 -0.03 -0.01 -0.06 0.01 -0.09 -0.06 -0.04 0.07 -0.08 -0.03 -0.10 -0.05 -0.02 -0.01 0.02 0.01 0.01 ]
C [ 0.02 0.04 0.01 0.02 0.03 -0.01 0.04 0.13 -0.03 0.14 0.19 0.12 0.15 0.22 0.03 -0.03 0.06 0.07 -0.05 -0.04 0.06 0.04 -0.00 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.03 0.05 0.07 -0.01 0.14 -0.03 -0.06 -0.02 -0.09 -0.04 -0.03 0.06 0.13 -0.03 0.21 0.14 -0.02 0.04 0.06 0.02 0.01 ]
T [ -0.00 -0.01 0.01 -0.03 0.03 -0.03 -0.03 0.02 -0.02 -0.06 -0.07 -0.07 0.04 -0.07 0.11 -0.03 -0.03 0.04 -0.04 -0.02 0.02 -0.03 -0.03 -0.01 0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages