Detailed information of deep learning profile BP000055.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in spleen using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000055.1
Cell line/tissue: spleen
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DNI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.02 0.08 -0.00 0.15 0.22 0.07 0.09 0.23 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ -0.00 0.01 0.01 0.04 -0.00 0.12 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 0.07 -0.00 0.21 0.11 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.02 -0.00 -0.00 0.01 -0.01 -0.00 -0.00 -0.00 0.03 -0.00 0.10 -0.01 -0.00 0.04 -0.00 -0.00 0.01 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 4317 4362 4206 4145 4147 5145 4873 4561 4544 4558 3976 4888 4724 3738 3872 3402 5556 6709 2181 7865 1962 969 1747 1531 240 6372 161 148 1243 7000 699 2729 266 1404 3415 4607 6642 4887 5512 4681 4404 4274 4825 4704 5422 7346 5779 3991 4370 4317 ]
C [ 4980 4809 4971 4956 5173 4345 4241 4801 4979 4991 4926 3107 2882 4602 4993 7744 4022 4861 5211 1985 5510 9226 741 15856 17920 10247 11419 18040 1753 1632 6555 2999 326 1475 7797 5830 3017 4625 3938 4264 4415 4264 3602 3303 4297 4228 4468 4451 3708 5852 ]
G [ 4742 4549 4625 4651 4432 4236 4127 4236 4355 5096 3795 5837 6995 5950 4952 3310 3524 3703 4542 6045 9338 975 13267 721 90 700 90 73 568 6781 9900 1059 17129 13564 2194 3942 6007 4692 4320 4776 5101 5531 6142 6866 4510 3355 3799 4011 5455 4747 ]
T [ 4514 4833 4751 4801 4801 4827 5312 4955 4675 3908 5856 4721 3952 4263 4736 4097 5451 3280 6619 2658 1743 7383 2798 445 303 1234 6883 292 14989 3140 1399 11766 832 2110 5147 4174 2887 4349 4783 4832 4633 4484 3984 3680 4324 3624 4507 6100 5020 3637 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.04 -0.05 0.04 -0.02 -0.09 -0.03 0.02 -0.05 0.05 -0.11 -0.05 -0.04 0.07 -0.07 -0.04 -0.09 -0.04 -0.02 0.00 0.03 0.01 0.01 ]
C [ 0.02 0.05 -0.00 0.03 0.03 -0.01 0.06 0.18 -0.03 0.18 0.22 0.13 0.18 0.23 0.02 -0.01 0.06 0.09 -0.03 -0.04 0.07 0.04 -0.00 0.02 0.01 ]
G [ 0.02 0.00 0.01 0.01 0.04 0.05 0.09 -0.04 0.18 -0.05 -0.06 -0.01 -0.09 -0.04 -0.00 0.06 0.15 -0.03 0.22 0.14 -0.02 0.04 0.06 0.02 0.01 ]
T [ 0.00 0.00 0.02 -0.03 0.04 -0.03 -0.03 0.03 -0.03 -0.07 -0.06 -0.08 0.07 -0.06 0.12 -0.01 -0.02 0.06 -0.03 -0.01 0.03 -0.02 -0.03 -0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2715

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 951

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 602

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 264

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 197

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 152

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 37

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages