Detailed information of deep learning profile BP000054.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in pancreas using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000054.1
Cell line/tissue: pancreas
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DND
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.01 -0.00 -0.00 0.04 -0.00 -0.01 0.10 -0.00 0.03 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.01 ]
C [ 0.00 0.02 0.01 -0.00 0.12 0.24 -0.00 0.08 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.13 -0.00 0.05 0.02 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.03 -0.00 -0.00 0.01 0.02 -0.00 0.00 0.25 0.10 0.07 0.24 0.16 -0.00 0.08 0.02 -0.00 0.01 0.01 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.03 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 4357 3984 3782 5474 6783 4871 3800 4510 3812 4215 4769 5038 5128 5093 4492 2880 4399 5478 2027 711 12711 1406 3111 15853 310 7555 1321 377 488 2975 8019 1886 2752 6986 3485 5777 4329 5005 4434 4144 5158 6291 4114 5060 5265 5600 5180 5079 5147 5149 ]
C [ 4569 3463 4894 5821 4042 3802 3269 4684 7511 6481 5928 5365 5071 4505 4964 6240 4020 2169 14542 18284 1077 10554 7282 601 103 152 766 112 934 13919 1090 9856 6293 4752 3930 3609 3396 5243 6351 7430 6053 3951 5291 4472 4371 4410 4485 4637 4881 4832 ]
G [ 4857 6548 6244 3702 4603 4592 4332 4420 3220 3531 4266 4492 4337 4013 4716 3054 6354 8219 1512 276 2912 6901 1703 1770 18932 11613 10468 18755 16465 798 9343 5712 1952 5577 5026 4197 8141 5207 4779 2917 3155 5103 5218 5241 5019 4365 4489 5299 5185 5040 ]
T [ 5728 5516 4591 4514 4083 6246 8110 5897 4968 5284 4548 4616 4975 5900 5339 7337 4738 3645 1430 240 2811 650 7415 1287 166 191 6956 267 1624 1819 1059 2057 8514 2196 7070 5928 3645 4056 3947 5020 5145 4166 4888 4738 4856 5136 5357 4496 4298 4490 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.03 -0.02 0.03 -0.01 -0.04 0.06 -0.03 -0.02 0.12 -0.07 0.07 -0.08 -0.08 -0.08 -0.03 0.03 -0.03 -0.03 0.04 -0.03 0.02 -0.01 0.00 ]
C [ 0.01 0.03 0.07 0.05 -0.02 0.15 0.25 -0.04 0.16 0.07 -0.01 -0.03 -0.10 0.00 -0.06 -0.04 0.19 -0.03 0.10 0.06 0.05 0.02 0.01 0.01 0.03 ]
G [ 0.01 0.02 0.00 0.05 0.08 -0.03 -0.04 0.10 0.07 -0.02 0.04 0.25 0.19 0.14 0.25 0.19 -0.02 0.19 0.08 -0.01 0.04 0.04 0.00 0.06 0.02 ]
T [ 0.01 0.01 0.03 -0.01 -0.03 -0.05 -0.11 -0.03 -0.08 0.08 -0.04 -0.06 -0.10 0.04 -0.05 0.01 -0.03 -0.09 -0.03 0.04 -0.06 0.04 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 227

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 98

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages