Detailed information of deep learning profile BP000054.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in pancreas using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000054.1
Cell line/tissue: pancreas
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DND
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.03 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.01 0.01 -0.00 0.02 0.08 -0.00 0.16 0.24 0.07 0.10 0.25 0.00 -0.00 0.02 0.01 -0.00 -0.00 0.03 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.02 0.05 -0.00 0.13 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.08 -0.00 0.24 0.12 -0.00 0.01 0.02 0.00 ]
T [ -0.01 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.03 -0.00 0.10 -0.01 -0.00 0.04 -0.00 -0.00 0.01 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 4490 4298 4496 5357 5136 4856 4738 4888 4166 5145 5020 3947 4056 3645 5928 7070 2196 8514 2057 1059 1819 1624 267 6956 191 166 1287 7415 650 2811 240 1430 3645 4738 7337 5339 5900 4975 4616 4548 5284 4968 5897 8110 6246 4083 4514 4591 5516 5728 ]
C [ 5040 5185 5299 4489 4365 5019 5241 5218 5103 3155 2917 4779 5207 8141 4197 5026 5577 1952 5712 9343 798 16465 18755 10468 11613 18932 1770 1703 6901 2912 276 1512 8219 6354 3054 4716 4013 4337 4492 4266 3531 3220 4420 4332 4592 4603 3702 6244 6548 4857 ]
G [ 4832 4881 4637 4485 4410 4371 4472 5291 3951 6053 7430 6351 5243 3396 3609 3930 4752 6293 9856 1090 13919 934 112 766 152 103 601 7282 10554 1077 18284 14542 2169 4020 6240 4964 4505 5071 5365 5928 6481 7511 4684 3269 3802 4042 5821 4894 3463 4569 ]
T [ 5149 5147 5079 5180 5600 5265 5060 4114 6291 5158 4144 4434 5005 4329 5777 3485 6986 2752 1886 8019 2975 488 377 1321 7555 310 15853 3111 1406 12711 711 2027 5478 4399 2880 4492 5093 5128 5038 4769 4215 3812 4510 3800 4871 6783 5474 3782 3984 4357 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.04 -0.06 0.04 -0.03 -0.09 -0.03 0.01 -0.05 0.04 -0.10 -0.06 -0.04 0.08 -0.08 -0.03 -0.11 -0.05 -0.03 -0.01 0.03 0.01 0.01 ]
C [ 0.02 0.06 0.00 0.04 0.04 -0.01 0.08 0.19 -0.02 0.19 0.25 0.14 0.19 0.25 0.04 -0.02 0.07 0.10 -0.04 -0.03 0.08 0.05 0.00 0.02 0.01 ]
G [ 0.03 0.01 0.01 0.02 0.05 0.06 0.10 -0.03 0.19 -0.04 -0.06 0.00 -0.10 -0.03 -0.01 0.07 0.16 -0.04 0.25 0.15 -0.02 0.05 0.07 0.03 0.01 ]
T [ 0.00 -0.01 0.02 -0.03 0.04 -0.03 -0.03 0.03 -0.03 -0.08 -0.08 -0.08 0.07 -0.07 0.12 -0.02 -0.03 0.06 -0.04 -0.01 0.03 -0.02 -0.03 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 227

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 98

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000072.1 CTCF ENCSR000DRR GM12874 Homo sapiens MA0139.2
BP000073.1 CTCF ENCSR000DRU GM12875 Homo sapiens MA0139.2
BP000074.1 CTCF ENCSR000DRZ GM12878 Homo sapiens MA0139.2
BP000075.1 CTCF ENCSR000DSU astrocyte of the spinal cord Homo sapiens MA0139.2
BP000076.1 CTCF ENCSR000DSZ astrocyte of the cerebellum Homo sapiens MA0139.2
BP000077.1 CTCF ENCSR000DTA brain microvascular endothelial cell Homo sapiens MA0139.2
BP000078.1 CTCF ENCSR000DTF cardiac fibroblast Homo sapiens MA0139.2
BP000079.1 CTCF ENCSR000DTI cardiac muscle cell Homo sapiens MA0139.2
BP000080.1 CTCF ENCSR000DTL choroid plexus epithelial cell Homo sapiens MA0139.2
BP000081.1 CTCF ENCSR000DTO HCT116 Homo sapiens MA0139.2
Showing 10 profiles of page 8 from 45 pages