Detailed information of deep learning profile BP000053.1

  1. Home
  2. Deep Learning Profile > BP000053.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in keratinocyte using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000053.1
Cell line/tissue: keratinocyte
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DNC
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.01 -0.01 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.00 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.02 0.07 -0.00 0.14 0.20 0.06 0.09 0.21 0.00 -0.00 0.02 0.01 -0.00 -0.00 0.03 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 0.05 -0.00 0.11 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 0.06 0.00 0.19 0.10 -0.00 0.01 0.02 0.01 ]
T [ 0.00 -0.01 0.01 -0.00 -0.00 0.01 -0.01 -0.00 -0.00 -0.01 0.01 -0.00 0.06 -0.01 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 5195 5407 5226 4856 5046 5601 5488 5193 5251 5202 4696 5787 5314 4521 4760 4321 6599 7648 2825 9114 2685 1524 2181 1823 490 7267 379 417 2408 7487 1179 4530 552 1793 4088 5427 7098 5481 6170 5439 5156 5123 5458 5409 6146 7781 6527 4871 5129 5007 ]
C [ 6131 5927 5977 6192 6124 5637 5598 6082 6109 6296 6093 4287 4073 6072 6045 9049 5036 5838 6646 2504 6257 10937 1214 18459 21258 11641 14513 21241 3168 2839 8588 3524 745 2398 9302 6744 4021 5657 5056 5692 5666 5127 4794 4416 5450 5511 5492 5657 4917 7002 ]
G [ 5808 5529 5730 5747 5582 5589 5505 5390 5538 6008 5094 6941 8305 7012 6053 4539 4710 5092 5638 7353 11340 1670 15209 1308 174 1050 231 199 802 8154 10415 2010 19655 15402 3271 5173 7574 6370 5683 6052 6215 6785 7349 8162 5762 4582 5096 5314 6503 5953 ]
T [ 5290 5561 5491 5629 5672 5597 5833 5759 5526 4918 6541 5409 4732 4819 5566 4515 6079 3846 7315 3453 2142 8293 3820 834 502 2466 7301 567 16046 3944 2242 12360 1472 2831 5763 5080 3731 4916 5515 5241 5387 5389 4823 4437 5066 4550 5309 6582 5875 4462 ]

Hypothetical CWM

   
A [ -0.01 -0.01 -0.01 0.01 0.03 -0.05 0.03 -0.01 -0.07 -0.02 0.00 -0.04 0.03 -0.09 -0.05 -0.02 0.06 -0.06 -0.03 -0.10 -0.05 -0.02 -0.01 0.02 0.00 0.00 -0.00 -0.00 ]
C [ 0.03 0.03 0.06 0.02 0.04 0.05 0.01 0.07 0.17 -0.02 0.16 0.21 0.12 0.16 0.21 0.04 -0.00 0.07 0.08 -0.02 -0.02 0.07 0.05 0.01 0.03 0.02 0.02 0.02 ]
G [ 0.04 0.04 0.03 0.02 0.03 0.05 0.07 0.10 -0.01 0.17 -0.02 -0.03 0.02 -0.06 -0.02 0.01 0.07 0.13 -0.00 0.21 0.13 -0.00 0.05 0.06 0.03 0.02 0.03 0.03 ]
T [ -0.00 -0.00 -0.01 0.01 -0.03 0.03 -0.02 -0.03 0.03 -0.02 -0.07 -0.08 -0.07 0.05 -0.06 0.08 -0.01 -0.03 0.04 -0.03 -0.02 0.01 -0.02 -0.03 -0.01 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 683

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages