Detailed information of deep learning profile BP000053.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in keratinocyte using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000053.1
Cell line/tissue: keratinocyte
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DNC
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.01 0.06 -0.00 0.01 -0.01 -0.00 -0.00 -0.01 0.01 -0.00 -0.00 0.01 -0.01 0.00 ]
C [ 0.01 0.02 0.01 -0.00 0.10 0.19 0.00 0.06 0.02 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.11 -0.00 0.05 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.03 -0.00 -0.00 0.01 0.02 -0.00 0.00 0.21 0.09 0.06 0.20 0.14 -0.00 0.07 0.02 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.00 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.01 0.01 0.00 ]

Frequency matrix

       
A [ 4462 5875 6582 5309 4550 5066 4437 4823 5389 5387 5241 5515 4916 3731 5080 5763 2831 1472 12360 2242 3944 16046 567 7301 2466 502 834 3820 8293 2142 3453 7315 3846 6079 4515 5566 4819 4732 5409 6541 4918 5526 5759 5833 5597 5672 5629 5491 5561 5290 ]
C [ 5953 6503 5314 5096 4582 5762 8162 7349 6785 6215 6052 5683 6370 7574 5173 3271 15402 19655 2010 10415 8154 802 199 231 1050 174 1308 15209 1670 11340 7353 5638 5092 4710 4539 6053 7012 8305 6941 5094 6008 5538 5390 5505 5589 5582 5747 5730 5529 5808 ]
G [ 7002 4917 5657 5492 5511 5450 4416 4794 5127 5666 5692 5056 5657 4021 6744 9302 2398 745 3524 8588 2839 3168 21241 14513 11641 21258 18459 1214 10937 6257 2504 6646 5838 5036 9049 6045 6072 4073 4287 6093 6296 6109 6082 5598 5637 6124 6192 5977 5927 6131 ]
T [ 5007 5129 4871 6527 7781 6146 5409 5458 5123 5156 5439 6170 5481 7098 5427 4088 1793 552 4530 1179 7487 2408 417 379 7267 490 1823 2181 1524 2685 9114 2825 7648 6599 4321 4760 4521 5314 5787 4696 5202 5251 5193 5488 5601 5046 4856 5226 5407 5195 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.01 -0.03 -0.02 0.01 -0.02 -0.03 0.04 -0.03 -0.01 0.08 -0.06 0.05 -0.07 -0.08 -0.07 -0.02 0.03 -0.03 -0.02 0.03 -0.03 0.01 -0.01 -0.00 -0.00 ]
C [ 0.03 0.03 0.02 0.03 0.06 0.05 -0.00 0.13 0.21 -0.00 0.13 0.07 0.01 -0.02 -0.06 0.02 -0.03 -0.02 0.17 -0.01 0.10 0.07 0.05 0.03 0.02 0.03 0.04 0.04 ]
G [ 0.02 0.02 0.02 0.03 0.01 0.05 0.07 -0.02 -0.02 0.08 0.07 -0.00 0.04 0.21 0.16 0.12 0.21 0.16 -0.02 0.17 0.07 0.01 0.05 0.04 0.02 0.06 0.03 0.03 ]
T [ -0.00 -0.00 0.00 0.00 0.02 -0.01 -0.02 -0.05 -0.10 -0.03 -0.06 0.06 -0.02 -0.05 -0.09 0.03 -0.04 0.00 -0.02 -0.07 -0.01 0.03 -0.05 0.03 0.01 -0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 683

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000072.1 CTCF ENCSR000DRR GM12874 Homo sapiens MA0139.2
BP000073.1 CTCF ENCSR000DRU GM12875 Homo sapiens MA0139.2
BP000074.1 CTCF ENCSR000DRZ GM12878 Homo sapiens MA0139.2
BP000075.1 CTCF ENCSR000DSU astrocyte of the spinal cord Homo sapiens MA0139.2
BP000076.1 CTCF ENCSR000DSZ astrocyte of the cerebellum Homo sapiens MA0139.2
BP000077.1 CTCF ENCSR000DTA brain microvascular endothelial cell Homo sapiens MA0139.2
BP000078.1 CTCF ENCSR000DTF cardiac fibroblast Homo sapiens MA0139.2
BP000079.1 CTCF ENCSR000DTI cardiac muscle cell Homo sapiens MA0139.2
BP000080.1 CTCF ENCSR000DTL choroid plexus epithelial cell Homo sapiens MA0139.2
BP000081.1 CTCF ENCSR000DTO HCT116 Homo sapiens MA0139.2
Showing 10 profiles of page 8 from 45 pages