Detailed information of deep learning profile BP000052.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000052.1
Cell line/tissue: A549
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DNA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.01 0.06 -0.00 0.01 -0.01 -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.01 -0.00 -0.00 ]
C [ 0.00 0.02 0.01 -0.00 0.09 0.17 0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.10 0.00 0.04 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.17 0.08 0.06 0.17 0.12 0.00 0.06 0.01 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.00 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 0.00 ]

Frequency matrix

       
A [ 4864 4415 4228 5638 6615 5182 4351 4896 4146 4480 5157 5271 5104 5469 4858 3489 4735 5634 2489 1024 12728 1872 3702 16156 455 7002 2046 419 748 3657 7659 2129 3313 7067 3627 5748 4452 5482 4714 4712 5267 6223 4634 5351 5398 5549 5382 5331 5275 5311 ]
C [ 5403 4565 5935 6557 5195 4994 4465 5589 8185 7429 6801 6240 6090 5704 6119 7353 4953 3094 15715 19703 1957 10869 8233 731 142 216 832 168 1433 15130 1820 11428 7356 5493 4912 4711 4644 5901 6786 8010 6836 5144 5978 5468 5311 5628 5553 5529 5771 5662 ]
G [ 5874 7275 7063 4773 5501 5408 5400 5418 4320 4589 5070 5448 5481 4821 5562 3892 7074 9249 2063 704 3137 8211 2413 2895 20989 14349 12096 20954 18015 1066 11024 5840 2367 6461 5946 5046 8923 6039 6125 4153 4359 6014 6212 6089 6203 5523 5572 6040 6158 5996 ]
T [ 5750 5636 4665 4923 4580 6307 7675 5988 5240 5393 4863 4932 5216 5897 5352 7157 5129 3914 1624 460 4069 939 7543 2109 305 324 6917 350 1695 2038 1388 2494 8855 2870 7406 6386 3872 4469 4266 5016 5429 4510 5067 4983 4979 5191 5384 4991 4687 4922 ]

Hypothetical CWM

   
A [ -0.01 -0.01 -0.01 -0.01 -0.03 -0.03 0.01 -0.02 -0.04 0.03 -0.03 -0.02 0.08 -0.05 0.04 -0.07 -0.06 -0.07 -0.03 0.01 -0.03 -0.03 0.02 -0.03 0.00 -0.01 -0.01 -0.01 ]
C [ 0.03 0.02 0.02 0.02 0.05 0.04 -0.00 0.12 0.18 -0.01 0.12 0.06 0.00 -0.02 -0.05 0.00 -0.04 -0.02 0.14 -0.01 0.08 0.05 0.04 0.02 0.02 0.02 0.03 0.03 ]
G [ 0.01 0.02 0.02 0.03 0.01 0.04 0.06 -0.02 -0.02 0.08 0.05 -0.01 0.03 0.18 0.13 0.11 0.18 0.14 -0.02 0.14 0.05 -0.01 0.03 0.03 0.01 0.04 0.02 0.02 ]
T [ -0.01 -0.01 -0.00 -0.00 0.01 -0.01 -0.02 -0.05 -0.08 -0.03 -0.06 0.05 -0.03 -0.04 -0.07 0.02 -0.04 -0.00 -0.03 -0.07 -0.02 0.02 -0.05 0.02 0.00 -0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 222

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 160

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 159

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 109

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages