Detailed information of deep learning profile BP000052.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000052.1
Cell line/tissue: A549
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DNA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.00 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.01 0.06 0.00 0.12 0.17 0.06 0.08 0.17 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 0.04 0.00 0.10 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 0.00 0.17 0.09 -0.00 0.01 0.02 0.00 ]
T [ -0.00 -0.00 0.01 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 -0.01 0.01 -0.00 0.06 -0.01 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 4922 4687 4991 5384 5191 4979 4983 5067 4510 5429 5016 4266 4469 3872 6386 7406 2870 8855 2494 1388 2038 1695 350 6917 324 305 2109 7543 939 4069 460 1624 3914 5129 7157 5352 5897 5216 4932 4863 5393 5240 5988 7675 6307 4580 4923 4665 5636 5750 ]
C [ 5996 6158 6040 5572 5523 6203 6089 6212 6014 4359 4153 6125 6039 8923 5046 5946 6461 2367 5840 11024 1066 18015 20954 12096 14349 20989 2895 2413 8211 3137 704 2063 9249 7074 3892 5562 4821 5481 5448 5070 4589 4320 5418 5400 5408 5501 4773 7063 7275 5874 ]
G [ 5662 5771 5529 5553 5628 5311 5468 5978 5144 6836 8010 6786 5901 4644 4711 4912 5493 7356 11428 1820 15130 1433 168 832 216 142 731 8233 10869 1957 19703 15715 3094 4953 7353 6119 5704 6090 6240 6801 7429 8185 5589 4465 4994 5195 6557 5935 4565 5403 ]
T [ 5311 5275 5331 5382 5549 5398 5351 4634 6223 5267 4712 4714 5482 4452 5748 3627 7067 3313 2129 7659 3657 748 419 2046 7002 455 16156 3702 1872 12728 1024 2489 5634 4735 3489 4858 5469 5104 5271 5157 4480 4146 4896 4351 5182 6615 5638 4228 4415 4864 ]

Hypothetical CWM

   
A [ -0.01 -0.01 -0.01 0.00 0.02 -0.05 0.02 -0.02 -0.07 -0.03 -0.00 -0.04 0.02 -0.07 -0.04 -0.03 0.05 -0.06 -0.03 -0.08 -0.05 -0.02 -0.01 0.01 -0.00 -0.00 -0.01 -0.01 ]
C [ 0.02 0.02 0.04 0.01 0.03 0.03 -0.01 0.05 0.14 -0.02 0.14 0.18 0.11 0.13 0.18 0.03 -0.01 0.05 0.08 -0.02 -0.02 0.06 0.04 0.01 0.03 0.02 0.02 0.01 ]
G [ 0.03 0.03 0.02 0.02 0.02 0.04 0.05 0.08 -0.01 0.14 -0.02 -0.04 0.00 -0.05 -0.02 0.00 0.06 0.12 -0.01 0.18 0.12 -0.00 0.04 0.05 0.02 0.02 0.02 0.03 ]
T [ -0.01 -0.01 -0.01 0.00 -0.03 0.02 -0.03 -0.03 0.01 -0.03 -0.07 -0.06 -0.07 0.04 -0.05 0.08 -0.02 -0.03 0.03 -0.04 -0.02 0.01 -0.03 -0.03 -0.01 -0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 222

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 160

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 159

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 109

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000021.1 CTCF ENCSR000BHV A549 Homo sapiens MA0139.2
BP000022.1 CTCF ENCSR000BHW A549 Homo sapiens MA0139.2
BP000023.1 CTCF ENCSR000BIE HepG2 Homo sapiens MA0139.2
BP000024.1 CTCF ENCSR000BLX SK-N-SH Homo sapiens MA0139.2
BP000025.1 CTCF ENCSR000BNH H1 Homo sapiens MA0139.2
BP000026.1 CTCF ENCSR000BNO T47D Homo sapiens MA0139.2
BP000027.1 CTCF ENCSR000BPJ K562 Homo sapiens MA0139.2
BP000028.1 CTCF ENCSR000BQE Ishikawa Homo sapiens MA0139.2
BP000029.1 CTCF ENCSR000BSE HCT116 Homo sapiens MA0139.2
BP000030.1 CTCF ENCSR000DKN H54 Homo sapiens MA0139.2
Showing 10 profiles of page 3 from 45 pages