Detailed information of deep learning profile BP000050.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000050.1
Cell line/tissue: MCF-7
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DMV
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.01 -0.00 -0.00 ]
C [ 0.00 0.01 0.01 0.00 0.01 0.06 0.00 0.11 0.16 0.05 0.08 0.16 0.00 0.00 0.02 0.01 0.00 -0.00 0.02 0.01 0.00 0.01 ]
G [ 0.00 0.01 0.01 0.02 0.04 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.05 0.00 0.15 0.08 0.00 0.01 0.02 0.01 ]
T [ -0.00 -0.01 0.00 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 -0.01 0.00 -0.00 0.04 -0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 4383 4510 4237 4116 4457 4562 4524 4371 4273 4305 4005 4825 4244 3667 4009 3468 5625 6255 2687 7282 2310 1432 1906 1564 422 6471 331 370 2258 6107 1004 3844 430 1497 3528 4816 6092 4464 5228 4537 4439 4391 4515 4477 5078 6249 5283 4140 4129 4028 ]
C [ 5196 5173 5326 5556 5266 4862 4851 5302 5116 5300 5143 3995 3812 5162 5117 7627 4408 5078 5670 2250 5117 9471 993 15287 18070 9877 12616 18185 2793 2598 7465 2241 788 2071 8070 5841 3588 4694 4240 4934 4746 4521 4295 4068 4691 5035 4837 4697 4564 6224 ]
G [ 5000 4787 4973 4913 4762 5063 5028 4625 4995 5313 4794 5756 6967 5990 5323 4062 4120 4471 4668 6561 9700 1792 12719 1478 199 703 214 153 613 7217 8810 2114 16939 13216 2780 4299 6347 5558 5029 5260 5376 5820 6352 6878 4847 4040 4421 4796 5585 5109 ]
T [ 4541 4650 4584 4535 4635 4633 4717 4822 4736 4202 5178 4544 4097 4301 4671 3963 4967 3316 6095 3027 1993 6425 3502 791 429 2069 5959 412 13456 3198 1841 10921 963 2336 4742 4164 3093 4404 4623 4389 4559 4388 3958 3697 4504 3796 4579 5487 4842 3759 ]

Hypothetical CWM

   
A [ -0.02 -0.01 -0.02 -0.01 -0.01 -0.02 -0.02 -0.02 -0.01 0.01 -0.05 0.01 -0.02 -0.06 -0.03 -0.01 -0.05 0.01 -0.07 -0.05 -0.02 0.03 -0.06 -0.03 -0.08 -0.05 -0.03 -0.02 -0.00 -0.02 -0.01 -0.02 -0.02 -0.02 -0.02 -0.02 -0.01 0.00 -0.01 -0.02 -0.02 -0.02 ]
C [ 0.03 0.02 0.03 0.01 0.01 0.03 0.03 0.05 0.02 0.03 0.04 0.01 0.05 0.13 -0.00 0.13 0.16 0.10 0.13 0.16 0.04 0.01 0.06 0.08 -0.01 -0.01 0.06 0.05 0.01 0.03 0.03 0.03 0.02 0.02 0.02 0.01 0.02 0.02 0.02 0.03 0.02 0.03 ]
G [ 0.02 0.03 0.02 0.04 0.05 0.04 0.04 0.03 0.03 0.03 0.04 0.06 0.08 0.00 0.13 -0.01 -0.01 0.02 -0.04 -0.00 0.01 0.06 0.10 0.00 0.16 0.11 0.01 0.05 0.06 0.03 0.03 0.03 0.04 0.04 0.04 0.05 0.02 0.01 0.02 0.02 0.03 0.03 ]
T [ -0.02 -0.02 -0.01 -0.01 -0.02 -0.02 -0.01 -0.02 -0.01 -0.03 0.01 -0.03 -0.03 0.00 -0.03 -0.06 -0.07 -0.07 0.02 -0.06 0.05 -0.03 -0.03 0.01 -0.04 -0.03 -0.00 -0.03 -0.04 -0.02 -0.02 -0.02 -0.02 -0.02 -0.02 -0.02 -0.02 -0.02 -0.02 -0.01 -0.02 -0.02 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 793

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 503

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 327

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 314

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 252

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 42

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages