Detailed information of deep learning profile BP000049.1

  1. Home
  2. Deep Learning Profile > BP000049.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000049.1
Cell line/tissue: MCF-7
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DMS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.01 -0.00 0.01 0.04 0.00 0.09 0.13 0.04 0.06 0.14 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 0.00 0.01 0.01 0.03 0.00 0.07 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.04 0.00 0.13 0.07 -0.00 0.01 0.01 0.00 ]
T [ 0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.04 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 5210 4911 5101 5509 5430 5094 5161 5303 4732 5574 5197 4601 4680 4184 6427 7390 3302 8384 3055 1765 2254 1986 519 7291 452 349 2369 7517 1122 4430 519 1772 4048 5289 7293 5542 6255 5471 5222 5125 5474 5399 6169 7813 6310 4877 5080 4871 5756 5737 ]
C [ 5547 5901 5668 5218 5264 5751 5639 5737 5607 4383 4158 5804 5611 8302 4959 5645 6137 2615 5876 9865 1250 16791 20346 11353 14065 20673 2715 2478 7985 2987 695 2167 8768 6518 3758 5177 4663 5267 5108 4856 4392 4091 5072 5217 5170 5099 4593 6791 6877 5664 ]
G [ 5439 5399 5288 5268 5255 5009 5272 5543 5065 6164 7313 6333 5564 4476 4369 4630 5148 6993 10311 2044 13855 1817 229 712 188 120 626 7843 10307 1954 18962 14962 3042 4827 6933 5906 5408 5677 5921 6309 7046 7761 5352 4173 4732 4947 6220 5487 4152 5034 ]
T [ 5430 5415 5569 5631 5677 5772 5554 5043 6222 5505 4958 4888 5771 4664 5871 3961 7039 3634 2384 7952 4267 1032 532 2270 6921 484 15916 3788 2212 12255 1450 2725 5768 4992 3642 5001 5300 5211 5375 5336 4714 4375 5033 4423 5414 6703 5733 4477 4841 5191 ]

Hypothetical CWM

   
A [ -0.01 -0.01 -0.01 0.00 0.02 -0.03 0.02 -0.01 -0.04 -0.02 -0.00 -0.03 0.02 -0.05 -0.03 -0.01 0.04 -0.04 -0.01 -0.06 -0.03 -0.01 -0.00 0.01 -0.00 0.00 -0.00 -0.00 ]
C [ 0.02 0.02 0.04 0.01 0.02 0.03 0.01 0.04 0.10 -0.01 0.10 0.13 0.08 0.11 0.14 0.03 0.00 0.05 0.06 -0.01 -0.01 0.05 0.04 0.01 0.02 0.02 0.02 0.01 ]
G [ 0.02 0.02 0.02 0.01 0.02 0.03 0.04 0.06 0.00 0.10 -0.02 -0.02 0.01 -0.03 -0.01 0.01 0.05 0.09 -0.00 0.14 0.09 0.00 0.03 0.04 0.02 0.02 0.02 0.02 ]
T [ -0.00 -0.00 -0.01 0.00 -0.02 0.02 -0.01 -0.02 0.01 -0.02 -0.04 -0.04 -0.05 0.03 -0.04 0.06 -0.01 -0.02 0.03 -0.02 -0.01 0.01 -0.02 -0.02 -0.00 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.neg_patterns.pattern_4

Num. of seqlets: 223

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 214

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 183

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_6

Num. of seqlets: 145

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_7

Num. of seqlets: 132

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 125

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 123

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages