Detailed information of deep learning profile BP000048.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000048.1
Cell line/tissue: MCF-7
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DMR
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.05 -0.00 0.01 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.07 0.14 0.00 0.04 0.01 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.08 0.00 0.03 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.16 0.07 0.05 0.15 0.10 0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 5870 5588 5067 6342 7377 6084 5194 5754 5069 5297 5933 6088 5906 6151 5687 4211 5771 6464 3224 1797 13289 2750 4425 17139 602 7597 2755 670 1227 4831 8801 2825 4175 8060 4612 6431 5116 6276 5483 5542 6034 6864 5754 6284 6390 6272 6368 6284 6026 6247 ]
C [ 5585 4669 5927 6648 5470 5115 4636 5840 8279 7775 6894 6304 6152 5852 6421 7700 5277 3305 16071 20609 2376 11054 8441 715 126 260 834 290 2023 15048 2438 10929 7698 5567 5097 4855 5127 6078 6938 7929 6675 5494 6131 5725 5487 5908 5766 5705 5909 5785 ]
G [ 6173 7286 7388 5229 5572 5720 5675 5517 4560 4890 5309 5553 5807 5094 5743 4173 6870 9460 2488 883 3130 8771 2840 3380 22778 15595 12386 22326 18415 1462 10627 6508 2920 6698 6147 5411 8839 6091 6372 4635 4945 6060 6130 6075 6276 5779 5635 6206 6521 6101 ]
T [ 6344 6429 5590 5753 5553 7053 8467 6861 6064 6010 5836 6027 6107 6875 6121 7888 6054 4743 2189 683 5177 1397 8266 2738 466 520 7997 686 2307 2631 2106 3710 9179 3647 8116 7275 4890 5527 5179 5866 6318 5554 5957 5888 5819 6013 6203 5777 5516 5839 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.00 -0.02 -0.01 0.01 -0.01 -0.03 0.03 -0.02 -0.02 0.07 -0.05 0.03 -0.06 -0.05 -0.05 -0.01 0.02 -0.02 -0.02 0.02 -0.02 0.01 -0.01 -0.00 ]
C [ 0.02 0.02 0.01 0.02 0.04 0.03 -0.01 0.10 0.16 -0.01 0.09 0.04 -0.01 -0.03 -0.05 0.00 -0.03 -0.02 0.11 -0.01 0.07 0.04 0.03 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.02 0.00 0.03 0.05 -0.02 -0.02 0.05 0.04 -0.01 0.03 0.16 0.12 0.09 0.16 0.12 -0.01 0.11 0.04 -0.00 0.02 0.02 0.01 0.04 0.02 ]
T [ -0.00 -0.00 0.00 0.00 0.01 -0.01 -0.02 -0.04 -0.07 -0.02 -0.05 0.04 -0.02 -0.04 -0.06 0.02 -0.04 -0.00 -0.02 -0.04 -0.01 0.02 -0.03 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 175

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 118

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages