Detailed information of deep learning profile BP000048.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000048.1
Cell line/tissue: MCF-7
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DMR
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 0.00 0.10 0.15 0.05 0.07 0.16 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.03 0.00 0.08 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.04 0.00 0.14 0.07 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.01 -0.00 0.05 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 5839 5516 5777 6203 6013 5819 5888 5957 5554 6318 5866 5179 5527 4890 7275 8116 3647 9179 3710 2106 2631 2307 686 7997 520 466 2738 8266 1397 5177 683 2189 4743 6054 7888 6121 6875 6107 6027 5836 6010 6064 6861 8467 7053 5553 5753 5590 6429 6344 ]
C [ 6101 6521 6206 5635 5779 6276 6075 6130 6060 4945 4635 6372 6091 8839 5411 6147 6698 2920 6508 10627 1462 18415 22326 12386 15595 22778 3380 2840 8771 3130 883 2488 9460 6870 4173 5743 5094 5807 5553 5309 4890 4560 5517 5675 5720 5572 5229 7388 7286 6173 ]
G [ 5785 5909 5705 5766 5908 5487 5725 6131 5494 6675 7929 6938 6078 5127 4855 5097 5567 7698 10929 2438 15048 2023 290 834 260 126 715 8441 11054 2376 20609 16071 3305 5277 7700 6421 5852 6152 6304 6894 7775 8279 5840 4636 5115 5470 6648 5927 4669 5585 ]
T [ 6247 6026 6284 6368 6272 6390 6284 5754 6864 6034 5542 5483 6276 5116 6431 4612 8060 4175 2825 8801 4831 1227 670 2755 7597 602 17139 4425 2750 13289 1797 3224 6464 5771 4211 5687 6151 5906 6088 5933 5297 5069 5754 5194 6084 7377 6342 5067 5588 5870 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.03 0.02 -0.01 -0.04 -0.02 -0.00 -0.04 0.02 -0.06 -0.04 -0.02 0.04 -0.05 -0.02 -0.07 -0.04 -0.02 -0.01 0.01 0.00 0.00 -0.00 -0.00 ]
C [ 0.02 0.04 0.01 0.02 0.02 -0.00 0.04 0.11 -0.01 0.12 0.16 0.09 0.12 0.16 0.03 -0.01 0.04 0.05 -0.02 -0.02 0.05 0.03 0.00 0.02 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.03 0.04 0.07 -0.01 0.11 -0.02 -0.03 0.00 -0.05 -0.03 -0.01 0.04 0.09 -0.01 0.16 0.10 -0.01 0.03 0.04 0.02 0.01 0.02 0.02 ]
T [ -0.00 -0.01 0.01 -0.02 0.02 -0.02 -0.02 0.02 -0.01 -0.05 -0.05 -0.06 0.03 -0.05 0.07 -0.02 -0.02 0.03 -0.03 -0.01 0.01 -0.01 -0.02 -0.00 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 175

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 118

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000041.1 CTCF ENCSR000DMA K562 Homo sapiens MA0139.2
BP000042.1 CTCF ENCSR000DMC kidney Homo sapiens MA0139.2
BP000043.1 CTCF ENCSR000DME LNCaP clone FGC Homo sapiens MA0139.2
BP000044.1 CTCF ENCSR000DMF LNCaP clone FGC Homo sapiens MA0139.2
BP000045.1 CTCF ENCSR000DMH lung Homo sapiens MA0139.2
BP000046.1 CTCF ENCSR000DML MCF-7 Homo sapiens MA0139.2
BP000047.1 CTCF ENCSR000DMO MCF-7 Homo sapiens MA0139.2
BP000049.1 CTCF ENCSR000DMS MCF-7 Homo sapiens MA0139.2
BP000050.1 CTCF ENCSR000DMV MCF-7 Homo sapiens MA0139.2
BP000051.1 CTCF ENCSR000DMY D721Med Homo sapiens MA0139.2
Showing 10 profiles of page 5 from 45 pages