Detailed information of deep learning profile BP000046.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000046.1
Cell line/tissue: MCF-7
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DML
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.01 0.04 -0.00 0.01 -0.01 -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.00 -0.01 -0.00 ]
C [ 0.01 0.02 0.01 0.00 0.08 0.16 0.00 0.05 0.02 0.00 0.00 -0.00 0.00 0.00 0.00 0.10 0.00 0.04 0.02 0.01 0.01 0.00 ]
G [ 0.01 0.00 0.01 0.03 -0.00 -0.00 0.01 0.02 0.00 0.00 0.16 0.08 0.05 0.16 0.11 0.00 0.06 0.01 0.00 0.01 0.01 0.00 ]
T [ -0.00 -0.00 -0.01 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.01 0.00 -0.00 ]

Frequency matrix

       
A [ 3688 4798 5413 4370 3745 4247 3552 3947 4270 4468 4296 4609 4193 3089 4135 4710 2223 1058 10671 1784 3117 13760 386 5599 1958 394 667 3246 6584 1870 3018 5822 3237 4811 3685 4773 3989 3945 4492 5081 4123 4608 4659 4559 4560 4429 4357 4408 4464 4314 ]
C [ 5353 5804 4941 4588 4148 5092 7084 6600 6052 5522 5418 5143 5690 6601 4419 2903 13426 17055 2038 9068 7867 687 130 163 790 167 1371 13329 1758 9974 6763 4872 4620 4307 4302 5366 6124 7255 6030 4960 5458 5089 4854 5164 5178 5041 5213 5211 5113 5325 ]
G [ 6233 4577 4970 4981 5169 5007 4187 4320 4702 4960 5217 4494 4950 3580 6293 8280 2124 727 2819 7548 2440 2679 18401 13151 10216 18301 15710 964 9504 5150 2275 5933 5304 4695 7990 5255 5461 3883 4109 5331 5520 5339 5487 5037 5053 5532 5667 5403 5384 5369 ]
T [ 3971 4066 3921 5306 6183 4899 4422 4378 4221 4295 4314 4999 4412 5975 4398 3352 1472 405 3717 845 5821 2119 328 332 6281 383 1497 1706 1399 2251 7189 2618 6084 5432 3268 3851 3671 4162 4614 3873 4144 4209 4245 4485 4454 4243 4008 4223 4284 4237 ]

Hypothetical CWM

   
A [ -0.00 -0.02 -0.02 -0.02 -0.02 -0.02 -0.02 -0.01 -0.01 -0.01 -0.02 -0.04 -0.03 0.00 -0.02 -0.04 0.02 -0.03 -0.02 0.05 -0.06 0.03 -0.08 -0.07 -0.07 -0.03 0.00 -0.04 -0.03 0.01 -0.03 -0.01 -0.02 -0.01 -0.01 -0.02 -0.01 -0.01 -0.02 ]
C [ 0.02 0.01 0.00 0.02 0.05 0.04 0.04 0.03 0.03 0.02 0.03 0.06 0.04 0.00 0.11 0.17 -0.00 0.11 0.06 0.02 -0.01 -0.04 0.01 -0.01 -0.01 0.14 0.00 0.08 0.06 0.04 0.03 0.02 0.02 0.03 0.03 0.05 0.04 0.02 0.03 ]
G [ 0.02 0.02 0.02 0.02 0.01 0.01 0.02 0.02 0.03 0.02 0.03 0.02 0.05 0.06 -0.00 -0.01 0.08 0.06 0.01 0.03 0.17 0.13 0.10 0.16 0.13 -0.01 0.13 0.04 0.01 0.04 0.03 0.02 0.05 0.03 0.03 0.01 0.01 0.03 0.02 ]
T [ -0.02 -0.00 0.01 -0.01 -0.02 -0.01 -0.02 -0.02 -0.02 -0.01 -0.01 0.00 -0.02 -0.03 -0.05 -0.09 -0.03 -0.06 0.03 -0.03 -0.05 -0.08 0.02 -0.05 -0.01 -0.04 -0.07 -0.02 0.01 -0.05 0.01 -0.01 -0.02 -0.02 -0.02 -0.01 -0.01 -0.02 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 430

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 380

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 376

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 309

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 304

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 267

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 165

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 100

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000072.1 CTCF ENCSR000DRR GM12874 Homo sapiens MA0139.2
BP000073.1 CTCF ENCSR000DRU GM12875 Homo sapiens MA0139.2
BP000074.1 CTCF ENCSR000DRZ GM12878 Homo sapiens MA0139.2
BP000075.1 CTCF ENCSR000DSU astrocyte of the spinal cord Homo sapiens MA0139.2
BP000076.1 CTCF ENCSR000DSZ astrocyte of the cerebellum Homo sapiens MA0139.2
BP000077.1 CTCF ENCSR000DTA brain microvascular endothelial cell Homo sapiens MA0139.2
BP000078.1 CTCF ENCSR000DTF cardiac fibroblast Homo sapiens MA0139.2
BP000079.1 CTCF ENCSR000DTI cardiac muscle cell Homo sapiens MA0139.2
BP000080.1 CTCF ENCSR000DTL choroid plexus epithelial cell Homo sapiens MA0139.2
BP000081.1 CTCF ENCSR000DTO HCT116 Homo sapiens MA0139.2
Showing 10 profiles of page 8 from 45 pages