Detailed information of deep learning profile BP000045.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in lung using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000045.1
Cell line/tissue: lung
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DMH
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.03 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.02 0.09 -0.00 0.17 0.25 0.07 0.10 0.26 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.03 0.01 -0.00 0.00 ]
G [ -0.00 0.01 0.02 0.05 -0.00 0.15 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 0.09 -0.00 0.25 0.13 -0.00 0.01 0.02 0.00 ]
T [ -0.01 0.02 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.03 -0.00 0.11 -0.01 -0.00 0.04 -0.00 -0.00 0.01 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 3931 3855 3950 5043 4707 4419 4344 4357 3529 4675 4516 3462 3536 3184 5382 6419 1720 7703 1539 711 1508 1425 164 6530 161 120 906 6785 517 2099 160 1187 3248 4226 7232 4935 5647 4451 4132 3928 4818 4567 5489 7907 5945 3597 4239 4026 5047 5133 ]
C [ 4675 4697 5100 3889 3844 4404 4835 4786 4755 2466 2284 4080 4734 7717 3733 4781 5093 1651 5435 8785 526 15331 17280 9769 10177 17317 1313 1298 5982 2561 177 1170 7801 6206 2578 4393 3601 3817 3973 3807 3166 2717 3984 3888 4178 4253 3104 6055 6269 4550 ]
G [ 4557 4496 4231 3977 3787 4073 4106 4980 3384 5926 7404 6046 5008 3006 3214 3496 4331 6081 9178 738 13312 592 76 615 138 90 542 6880 10282 752 16987 13709 1770 3577 5604 4229 3796 4673 5041 5713 6120 7253 4242 2747 3278 3659 5564 4525 3073 4243 ]
T [ 4590 4705 4472 4844 5415 4857 4468 3630 6085 4686 3549 4165 4475 3846 5424 3057 6609 2318 1601 7519 2407 405 233 839 7277 226 14992 2790 972 12341 429 1687 4934 3744 2339 4196 4709 4812 4607 4305 3649 3216 4038 3211 4352 6244 4846 3147 3364 3827 ]

Hypothetical CWM

   
A [ -0.01 -0.02 0.01 0.04 -0.06 0.05 -0.02 -0.10 -0.04 0.01 -0.06 0.04 -0.12 -0.07 -0.06 0.09 -0.08 -0.05 -0.11 -0.05 -0.02 -0.00 0.03 0.01 ]
C [ 0.02 0.06 -0.01 0.04 0.04 -0.02 0.07 0.21 -0.04 0.20 0.25 0.14 0.19 0.26 0.04 -0.02 0.07 0.11 -0.04 -0.04 0.08 0.06 -0.00 0.02 ]
G [ 0.02 0.01 0.01 0.02 0.04 0.07 0.10 -0.04 0.20 -0.05 -0.06 0.01 -0.10 -0.03 -0.00 0.07 0.17 -0.04 0.26 0.17 -0.02 0.05 0.08 0.03 ]
T [ 0.00 -0.01 0.02 -0.03 0.05 -0.04 -0.04 0.04 -0.03 -0.07 -0.07 -0.09 0.09 -0.07 0.13 -0.03 -0.04 0.06 -0.05 -0.01 0.03 -0.03 -0.04 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 520

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 432

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 367

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 149

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 23

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages