Detailed information of deep learning profile BP000045.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in lung using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000045.1
Cell line/tissue: lung
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DMH
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.01 -0.00 -0.00 0.04 -0.00 -0.01 0.11 -0.00 0.03 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.02 -0.01 ]
C [ 0.00 0.02 0.01 -0.00 0.13 0.25 -0.00 0.09 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.15 -0.00 0.05 0.02 0.01 -0.00 ]
G [ 0.00 -0.00 0.01 0.03 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.26 0.10 0.07 0.25 0.17 -0.00 0.09 0.02 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.03 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 3827 3364 3147 4846 6244 4352 3211 4038 3216 3649 4305 4607 4812 4709 4196 2339 3744 4934 1687 429 12341 972 2790 14992 226 7277 839 233 405 2407 7519 1601 2318 6609 3057 5424 3846 4475 4165 3549 4686 6085 3630 4468 4857 5415 4844 4472 4705 4590 ]
C [ 4243 3073 4525 5564 3659 3278 2747 4242 7253 6120 5713 5041 4673 3796 4229 5604 3577 1770 13709 16987 752 10282 6880 542 90 138 615 76 592 13312 738 9178 6081 4331 3496 3214 3006 5008 6046 7404 5926 3384 4980 4106 4073 3787 3977 4231 4496 4557 ]
G [ 4550 6269 6055 3104 4253 4178 3888 3984 2717 3166 3807 3973 3817 3601 4393 2578 6206 7801 1170 177 2561 5982 1298 1313 17317 10177 9769 17280 15331 526 8785 5435 1651 5093 4781 3733 7717 4734 4080 2284 2466 4755 4786 4835 4404 3844 3889 5100 4697 4675 ]
T [ 5133 5047 4026 4239 3597 5945 7907 5489 4567 4818 3928 4132 4451 5647 4935 7232 4226 3248 1187 160 2099 517 6785 906 120 161 6530 164 1425 1508 711 1539 7703 1720 6419 5382 3184 3536 3462 4516 4675 3529 4357 4344 4419 4707 5043 3950 3855 3931 ]

Hypothetical CWM

   
A [ -0.00 -0.04 -0.03 0.03 -0.01 -0.05 0.06 -0.04 -0.03 0.13 -0.07 0.09 -0.09 -0.07 -0.07 -0.03 0.04 -0.04 -0.04 0.05 -0.03 0.02 -0.01 0.00 ]
C [ 0.03 0.08 0.05 -0.02 0.17 0.26 -0.04 0.17 0.07 -0.00 -0.03 -0.10 0.01 -0.06 -0.05 0.20 -0.04 0.10 0.07 0.04 0.02 0.01 0.01 0.02 ]
G [ 0.02 -0.00 0.06 0.08 -0.04 -0.04 0.11 0.07 -0.02 0.04 0.26 0.19 0.14 0.25 0.20 -0.04 0.21 0.07 -0.02 0.04 0.04 -0.01 0.06 0.02 ]
T [ 0.01 0.03 -0.00 -0.02 -0.05 -0.11 -0.05 -0.08 0.09 -0.06 -0.07 -0.12 0.04 -0.06 0.01 -0.04 -0.10 -0.02 0.05 -0.06 0.04 0.01 -0.02 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 520

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 432

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 367

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 149

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 23

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000031.1 CTCF ENCSR000DKP GM10248 Homo sapiens MA0139.2
BP000032.1 CTCF ENCSR000DKR GM10266 Homo sapiens MA0139.2
BP000033.1 CTCF ENCSR000DKV GM12878 Homo sapiens MA0139.2
BP000034.1 CTCF ENCSR000DKZ GM13976 Homo sapiens MA0139.2
BP000035.1 CTCF ENCSR000DLB GM13977 Homo sapiens MA0139.2
BP000036.1 CTCF ENCSR000DLG GM20000 Homo sapiens MA0139.2
BP000037.1 CTCF ENCSR000DLK H1 Homo sapiens MA0139.2
BP000038.1 CTCF ENCSR000DLO HeLa-S3 Homo sapiens MA0139.2
BP000039.1 CTCF ENCSR000DLS HepG2 Homo sapiens MA0139.2
BP000040.1 CTCF ENCSR000DLW endothelial cell of umbilical vein Homo sapiens MA0139.2
Showing 10 profiles of page 4 from 45 pages