Detailed information of deep learning profile BP000043.1

  1. Home
  2. Deep Learning Profile > BP000043.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in LNCaP clone FGC using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000043.1
Cell line/tissue: LNCaP clone FGC
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DME
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.13 0.19 0.06 0.08 0.21 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.04 -0.00 0.11 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.06 -0.00 0.19 0.09 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.02 -0.00 0.09 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 5115 4849 4908 5595 5427 5186 5237 5329 4785 5623 5343 4443 4664 4172 6546 7774 2820 8862 2683 1372 2001 1957 387 7413 314 269 1831 7795 919 3638 384 1816 4127 5242 7521 5631 6265 5478 5163 5073 5624 5465 6370 8181 6465 4671 5079 5019 5869 6110 ]
C [ 5320 5446 5501 4866 4791 5378 5489 5609 5302 3592 3484 5371 5417 8153 4458 5272 5944 2168 5782 9866 899 17073 19967 10896 12700 20144 2319 1976 7530 3168 449 1805 8461 6413 3341 5028 4282 4567 4789 4554 3937 3612 4746 4707 4765 4812 4074 6413 6521 5153 ]
G [ 5090 5187 4954 4805 4847 4750 4800 5433 4410 6256 7356 6324 5362 3963 3978 4118 4959 6606 10340 1436 14440 1245 179 849 251 134 688 7480 10632 1401 19105 14814 2622 4476 6678 5421 4936 5489 5694 6115 6769 7609 4918 3731 4264 4523 6066 5164 4025 4826 ]
T [ 5446 5489 5608 5705 5906 5657 5445 4600 6474 5500 4788 4833 5528 4683 5989 3807 7248 3335 2166 8297 3631 696 438 1813 7706 424 16133 3720 1890 12764 1033 2536 5761 4840 3431 4891 5488 5437 5325 5229 4641 4285 4937 4352 5477 6965 5752 4375 4556 4882 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.05 0.03 -0.02 -0.07 -0.03 0.01 -0.05 0.04 -0.09 -0.04 -0.03 0.07 -0.06 -0.02 -0.08 -0.03 -0.02 -0.01 0.02 0.00 0.01 ]
C [ 0.02 0.05 0.00 0.03 0.03 -0.01 0.05 0.15 -0.03 0.15 0.20 0.12 0.15 0.21 0.03 -0.01 0.06 0.08 -0.03 -0.03 0.06 0.05 0.00 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.05 0.06 0.09 -0.02 0.16 -0.03 -0.04 -0.01 -0.08 -0.04 -0.01 0.05 0.13 -0.02 0.21 0.13 -0.02 0.04 0.05 0.03 0.01 ]
T [ 0.00 -0.01 0.01 -0.02 0.03 -0.03 -0.03 0.03 -0.02 -0.06 -0.06 -0.08 0.06 -0.06 0.11 -0.01 -0.03 0.04 -0.04 -0.01 0.02 -0.02 -0.03 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.neg_patterns.pattern_1

Num. of seqlets: 137

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages