Detailed information of deep learning profile BP000043.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in LNCaP clone FGC using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000043.1
Cell line/tissue: LNCaP clone FGC
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DME
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.09 -0.00 0.02 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.09 0.19 -0.00 0.06 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.11 -0.00 0.04 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.21 0.08 0.06 0.19 0.13 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 4882 4556 4375 5752 6965 5477 4352 4937 4285 4641 5229 5325 5437 5488 4891 3431 4840 5761 2536 1033 12764 1890 3720 16133 424 7706 1813 438 696 3631 8297 2166 3335 7248 3807 5989 4683 5528 4833 4788 5500 6474 4600 5445 5657 5906 5705 5608 5489 5446 ]
C [ 4826 4025 5164 6066 4523 4264 3731 4918 7609 6769 6115 5694 5489 4936 5421 6678 4476 2622 14814 19105 1401 10632 7480 688 134 251 849 179 1245 14440 1436 10340 6606 4959 4118 3978 3963 5362 6324 7356 6256 4410 5433 4800 4750 4847 4805 4954 5187 5090 ]
G [ 5153 6521 6413 4074 4812 4765 4707 4746 3612 3937 4554 4789 4567 4282 5028 3341 6413 8461 1805 449 3168 7530 1976 2319 20144 12700 10896 19967 17073 899 9866 5782 2168 5944 5272 4458 8153 5417 5371 3484 3592 5302 5609 5489 5378 4791 4866 5501 5446 5320 ]
T [ 6110 5869 5019 5079 4671 6465 8181 6370 5465 5624 5073 5163 5478 6265 5631 7521 5242 4127 1816 384 3638 919 7795 1831 269 314 7413 387 1957 2001 1372 2683 8862 2820 7774 6546 4172 4664 4443 5343 5623 4785 5329 5237 5186 5427 5595 4908 4849 5115 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.03 -0.02 0.02 -0.01 -0.04 0.04 -0.03 -0.01 0.11 -0.06 0.06 -0.08 -0.06 -0.06 -0.02 0.03 -0.03 -0.03 0.03 -0.02 0.01 -0.01 0.00 ]
C [ 0.01 0.03 0.05 0.04 -0.02 0.13 0.21 -0.02 0.13 0.05 -0.01 -0.04 -0.08 -0.01 -0.04 -0.03 0.16 -0.02 0.09 0.06 0.05 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.00 0.05 0.06 -0.03 -0.03 0.08 0.06 -0.01 0.03 0.21 0.15 0.12 0.20 0.15 -0.03 0.15 0.05 -0.01 0.03 0.03 0.00 0.05 0.02 ]
T [ 0.01 0.00 0.02 -0.01 -0.02 -0.03 -0.08 -0.02 -0.06 0.07 -0.03 -0.04 -0.09 0.04 -0.05 0.01 -0.03 -0.07 -0.02 0.03 -0.05 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.neg_patterns.pattern_1

Num. of seqlets: 137

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000072.1 CTCF ENCSR000DRR GM12874 Homo sapiens MA0139.2
BP000073.1 CTCF ENCSR000DRU GM12875 Homo sapiens MA0139.2
BP000074.1 CTCF ENCSR000DRZ GM12878 Homo sapiens MA0139.2
BP000075.1 CTCF ENCSR000DSU astrocyte of the spinal cord Homo sapiens MA0139.2
BP000076.1 CTCF ENCSR000DSZ astrocyte of the cerebellum Homo sapiens MA0139.2
BP000077.1 CTCF ENCSR000DTA brain microvascular endothelial cell Homo sapiens MA0139.2
BP000078.1 CTCF ENCSR000DTF cardiac fibroblast Homo sapiens MA0139.2
BP000079.1 CTCF ENCSR000DTI cardiac muscle cell Homo sapiens MA0139.2
BP000080.1 CTCF ENCSR000DTL choroid plexus epithelial cell Homo sapiens MA0139.2
BP000081.1 CTCF ENCSR000DTO HCT116 Homo sapiens MA0139.2
Showing 10 profiles of page 8 from 45 pages