Detailed information of deep learning profile BP000042.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in kidney using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000042.1
Cell line/tissue: kidney
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DMC
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.10 0.19 -0.00 0.07 0.02 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.10 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.02 -0.00 0.00 0.20 0.07 0.06 0.18 0.11 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4521 4122 3881 5616 6939 5044 3878 4671 3920 4342 4866 5141 5204 5210 4505 3035 4482 5598 2032 584 13203 1410 3338 16144 316 7742 1373 397 633 3319 8032 2102 2937 6967 3614 5883 4425 5240 4596 4340 5303 6404 4356 5231 5470 5690 5393 5211 5351 5254 ]
C [ 4591 3634 5033 5941 4135 3884 3360 4853 7689 6648 5977 5389 5120 4672 5163 6379 4154 2340 14978 19018 1089 10642 7243 533 101 204 769 202 1191 13686 1384 9927 6323 4853 4086 3643 3685 5265 6370 7304 6126 4071 5255 4558 4430 4494 4639 4732 4910 4959 ]
G [ 5012 6596 6393 3803 4670 4646 4414 4435 3259 3618 4435 4712 4463 4024 4758 3087 6417 8246 1508 241 2707 7244 1610 1961 19417 11811 10991 19053 16405 1041 9378 5722 2147 5683 5070 4323 8141 5238 4941 3152 3357 5292 5364 5378 5164 4564 4535 5418 5297 5212 ]
T [ 5894 5666 4711 4658 4274 6444 8366 6059 5150 5410 4740 4776 5231 6112 5592 7517 4965 3834 1500 175 3019 722 7827 1380 184 261 6885 366 1789 1972 1224 2267 8611 2515 7248 6169 3767 4275 4111 5222 5232 4251 5043 4851 4954 5270 5451 4657 4460 4593 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.03 -0.02 0.02 -0.01 -0.03 0.04 -0.02 -0.02 0.10 -0.05 0.05 -0.07 -0.05 -0.06 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.01 0.00 ]
C [ 0.03 0.02 0.02 0.03 0.06 0.04 -0.01 0.13 0.20 -0.02 0.13 0.06 0.01 -0.03 -0.06 0.00 -0.03 -0.02 0.14 -0.01 0.08 0.05 0.04 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.02 0.02 0.00 0.05 0.06 -0.02 -0.03 0.09 0.07 -0.01 0.03 0.20 0.14 0.11 0.18 0.14 -0.02 0.14 0.06 0.00 0.03 0.03 0.01 0.05 0.02 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.01 -0.02 -0.04 -0.08 -0.03 -0.06 0.06 -0.03 -0.04 -0.07 0.03 -0.04 0.01 -0.03 -0.06 -0.02 0.03 -0.04 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 360

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 316

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages