Detailed information of deep learning profile BP000042.1

  1. Home
  2. Deep Learning Profile > BP000042.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in kidney using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000042.1
Cell line/tissue: kidney
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DMC
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.11 0.18 0.06 0.07 0.20 0.00 -0.00 0.02 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.10 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.07 -0.00 0.19 0.10 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 4593 4460 4657 5451 5270 4954 4851 5043 4251 5232 5222 4111 4275 3767 6169 7248 2515 8611 2267 1224 1972 1789 366 6885 261 184 1380 7827 722 3019 175 1500 3834 4965 7517 5592 6112 5231 4776 4740 5410 5150 6059 8366 6444 4274 4658 4711 5666 5894 ]
C [ 5212 5297 5418 4535 4564 5164 5378 5364 5292 3357 3152 4941 5238 8141 4323 5070 5683 2147 5722 9378 1041 16405 19053 10991 11811 19417 1961 1610 7244 2707 241 1508 8246 6417 3087 4758 4024 4463 4712 4435 3618 3259 4435 4414 4646 4670 3803 6393 6596 5012 ]
G [ 4959 4910 4732 4639 4494 4430 4558 5255 4071 6126 7304 6370 5265 3685 3643 4086 4853 6323 9927 1384 13686 1191 202 769 204 101 533 7243 10642 1089 19018 14978 2340 4154 6379 5163 4672 5120 5389 5977 6648 7689 4853 3360 3884 4135 5941 5033 3634 4591 ]
T [ 5254 5351 5211 5393 5690 5470 5231 4356 6404 5303 4340 4596 5240 4425 5883 3614 6967 2937 2102 8032 3319 633 397 1373 7742 316 16144 3338 1410 13203 584 2032 5598 4482 3035 4505 5210 5204 5141 4866 4342 3920 4671 3878 5044 6939 5616 3881 4122 4521 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.04 0.03 -0.02 -0.06 -0.03 0.01 -0.04 0.03 -0.07 -0.04 -0.03 0.06 -0.06 -0.03 -0.08 -0.04 -0.02 -0.01 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.02 0.05 0.01 0.03 0.03 0.00 0.06 0.14 -0.02 0.14 0.18 0.11 0.14 0.20 0.03 -0.01 0.07 0.09 -0.03 -0.02 0.06 0.05 0.00 0.02 0.02 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.04 0.05 0.08 -0.01 0.14 -0.02 -0.03 0.00 -0.06 -0.03 0.01 0.06 0.13 -0.02 0.20 0.13 -0.01 0.04 0.06 0.03 0.02 0.02 0.03 ]
T [ 0.00 -0.01 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.06 -0.05 -0.07 0.05 -0.05 0.10 -0.02 -0.02 0.04 -0.03 -0.01 0.02 -0.02 -0.03 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 360

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 316

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000031.1 CTCF ENCSR000DKP GM10248 Homo sapiens MA0139.2
BP000032.1 CTCF ENCSR000DKR GM10266 Homo sapiens MA0139.2
BP000033.1 CTCF ENCSR000DKV GM12878 Homo sapiens MA0139.2
BP000034.1 CTCF ENCSR000DKZ GM13976 Homo sapiens MA0139.2
BP000035.1 CTCF ENCSR000DLB GM13977 Homo sapiens MA0139.2
BP000036.1 CTCF ENCSR000DLG GM20000 Homo sapiens MA0139.2
BP000037.1 CTCF ENCSR000DLK H1 Homo sapiens MA0139.2
BP000038.1 CTCF ENCSR000DLO HeLa-S3 Homo sapiens MA0139.2
BP000039.1 CTCF ENCSR000DLS HepG2 Homo sapiens MA0139.2
BP000040.1 CTCF ENCSR000DLW endothelial cell of umbilical vein Homo sapiens MA0139.2
Showing 10 profiles of page 4 from 45 pages