Detailed information of deep learning profile BP000041.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000041.1
Cell line/tissue: K562
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DMA
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.07 -0.00 0.11 0.18 0.06 0.09 0.19 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.04 0.00 0.09 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 0.00 0.17 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.01 -0.00 -0.00 -0.01 0.01 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4963 5043 5061 4675 5030 5439 5272 5057 5064 5065 4622 5589 5091 4321 4474 4129 6407 7376 2862 8696 2949 1547 2273 2118 507 6235 393 389 2194 7289 1146 4367 541 1870 4181 4982 6935 5328 5879 5227 5113 4989 5294 5192 5978 7567 6289 4790 4971 4743 ]
C [ 5561 5561 5532 5929 5761 5104 5231 5653 5596 5846 5520 4172 3923 5542 5837 8174 4818 5497 6229 2536 5618 10383 1390 16502 19959 11521 13916 20158 2989 2581 7856 3489 713 2203 8281 6468 3774 5193 4758 5222 5057 4795 4307 3987 4944 5160 5059 5125 4550 6542 ]
G [ 5496 5181 5310 5382 5187 5205 5106 5069 5107 5506 4843 6314 7562 6465 5617 4420 4308 4625 5325 6646 10422 2093 13619 1597 203 930 216 170 701 7487 9920 1970 18459 14337 3005 4994 6883 5822 5312 5683 5804 6358 6989 7726 5413 4151 4581 4821 6161 5531 ]
T [ 5203 5438 5320 5237 5245 5475 5614 5444 5456 4806 6238 5148 4647 4895 5295 4500 5690 3725 6807 3345 2234 7200 3941 1006 554 2537 6698 506 15339 3866 2301 11397 1510 2813 5756 4779 3631 4880 5274 5091 5249 5081 4633 4318 4888 4345 5294 6487 5541 4407 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.03 -0.04 0.04 -0.01 -0.07 -0.02 0.01 -0.04 0.03 -0.08 -0.05 -0.02 0.06 -0.06 -0.02 -0.09 -0.04 -0.02 -0.01 0.02 0.00 ]
C [ 0.02 0.05 0.01 0.02 0.03 -0.01 0.04 0.15 -0.01 0.14 0.19 0.11 0.15 0.19 0.03 -0.02 0.05 0.07 -0.04 -0.04 0.05 0.04 -0.00 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.04 0.05 0.08 -0.01 0.14 -0.03 -0.04 -0.00 -0.07 -0.03 -0.01 0.05 0.11 -0.02 0.19 0.12 -0.01 0.04 0.05 0.02 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.01 -0.02 0.02 -0.02 -0.06 -0.07 -0.06 0.05 -0.05 0.09 -0.01 -0.02 0.04 -0.03 -0.00 0.02 -0.02 -0.03 -0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages