Detailed information of deep learning profile BP000041.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000041.1
Cell line/tissue: K562
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DMA
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.01 -0.01 -0.00 -0.00 -0.01 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.17 0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.09 0.00 0.04 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.19 0.09 0.06 0.18 0.11 -0.00 0.07 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 4407 5541 6487 5294 4345 4888 4318 4633 5081 5249 5091 5274 4880 3631 4779 5756 2813 1510 11397 2301 3866 15339 506 6698 2537 554 1006 3941 7200 2234 3345 6807 3725 5690 4500 5295 4895 4647 5148 6238 4806 5456 5444 5614 5475 5245 5237 5320 5438 5203 ]
C [ 5531 6161 4821 4581 4151 5413 7726 6989 6358 5804 5683 5312 5822 6883 4994 3005 14337 18459 1970 9920 7487 701 170 216 930 203 1597 13619 2093 10422 6646 5325 4625 4308 4420 5617 6465 7562 6314 4843 5506 5107 5069 5106 5205 5187 5382 5310 5181 5496 ]
G [ 6542 4550 5125 5059 5160 4944 3987 4307 4795 5057 5222 4758 5193 3774 6468 8281 2203 713 3489 7856 2581 2989 20158 13916 11521 19959 16502 1390 10383 5618 2536 6229 5497 4818 8174 5837 5542 3923 4172 5520 5846 5596 5653 5231 5104 5761 5929 5532 5561 5561 ]
T [ 4743 4971 4790 6289 7567 5978 5192 5294 4989 5113 5227 5879 5328 6935 4982 4181 1870 541 4367 1146 7289 2194 389 393 6235 507 2118 2273 1547 2949 8696 2862 7376 6407 4129 4474 4321 5091 5589 4622 5065 5064 5057 5272 5439 5030 4675 5061 5043 4963 ]

Hypothetical CWM

   
A [ -0.00 -0.03 -0.02 0.02 -0.00 -0.03 0.04 -0.02 -0.01 0.09 -0.05 0.05 -0.06 -0.07 -0.06 -0.02 0.02 -0.02 -0.01 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.05 0.04 -0.01 0.12 0.19 -0.02 0.11 0.05 -0.01 -0.03 -0.07 -0.00 -0.04 -0.03 0.14 -0.01 0.08 0.05 0.04 0.02 0.01 0.01 0.02 ]
G [ 0.01 -0.00 0.04 0.05 -0.04 -0.04 0.07 0.05 -0.02 0.03 0.19 0.15 0.11 0.19 0.14 -0.01 0.15 0.04 -0.01 0.03 0.02 0.01 0.05 0.02 ]
T [ 0.00 0.02 -0.01 -0.02 -0.04 -0.09 -0.02 -0.06 0.06 -0.02 -0.05 -0.08 0.03 -0.04 0.01 -0.02 -0.07 -0.01 0.04 -0.04 0.03 0.01 -0.01 -0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000082.1 CTCF ENCSR000DTR epithelial cell of esophagus Homo sapiens MA0139.2
BP000083.1 CTCF ENCSR000DTW HEK293 Homo sapiens MA0139.2
BP000084.1 CTCF ENCSR000DUB HeLa-S3 Homo sapiens MA0139.2
BP000085.1 CTCF ENCSR000DUG HepG2 Homo sapiens MA0139.2
BP000086.1 CTCF ENCSR000DUH foreskin fibroblast Homo sapiens MA0139.2
BP000087.1 CTCF ENCSR000DUM HFF-Myc Homo sapiens MA0139.2
BP000088.1 CTCF ENCSR000DUP HL-60 Homo sapiens MA0139.2
BP000089.1 CTCF ENCSR000DUS mammary epithelial cell Homo sapiens MA0139.2
BP000090.1 CTCF ENCSR000DUU fibroblast of mammary gland Homo sapiens MA0139.2
BP000091.1 CTCF ENCSR000DUX fibroblast of pulmonary artery Homo sapiens MA0139.2
Showing 10 profiles of page 9 from 45 pages