Detailed information of deep learning profile BP000039.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000039.1
Cell line/tissue: HepG2
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DLS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.01 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.07 -0.00 0.14 0.22 0.07 0.10 0.23 0.00 -0.00 0.02 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.02 0.05 0.00 0.12 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.07 0.00 0.21 0.11 -0.00 0.01 0.02 0.00 ]
T [ -0.01 0.01 -0.00 -0.00 0.01 -0.01 -0.00 -0.00 -0.01 0.01 -0.00 0.09 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 4386 4100 4186 4733 4665 4363 4453 4482 3964 4625 4502 3732 4010 3464 5390 6461 2547 7507 2367 1355 1779 1643 326 5799 296 220 1512 6830 797 3328 384 1413 3481 4356 6301 4742 5249 4673 4233 4221 4602 4538 5284 6838 5457 4005 4335 4246 4988 5076 ]
C [ 4679 4950 4834 4400 4414 4743 4748 4865 4716 3516 3262 4821 4692 7116 4096 4654 5140 1932 4750 8505 967 14520 17328 10233 11592 17494 2084 1678 6699 2701 416 1583 7351 5656 2909 4376 3882 4215 4349 4157 3614 3344 4192 4142 4241 4241 3663 5651 5746 4635 ]
G [ 4479 4578 4363 4345 4244 4140 4392 4620 4080 5312 6308 5492 4635 3681 3575 3760 4371 5822 9116 1568 12069 1236 97 533 135 96 420 6641 9004 1349 16356 13047 2220 3984 5945 4822 4293 4708 5021 5292 5962 6652 4432 3398 3824 4013 5305 4589 3527 4221 ]
T [ 4578 4494 4739 4644 4799 4876 4529 4155 5362 4669 4050 4077 4785 3861 5061 3247 6064 2861 1889 6694 3307 723 371 1557 6099 312 14106 2973 1622 10744 966 2079 5070 4126 2967 4182 4698 4526 4519 4452 3944 3588 4214 3744 4600 5863 4819 3636 3861 4190 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.03 -0.05 0.04 -0.01 -0.07 -0.03 0.01 -0.04 0.03 -0.08 -0.05 -0.03 0.07 -0.07 -0.03 -0.10 -0.05 -0.02 -0.01 0.02 0.00 0.01 -0.00 -0.00 ]
C [ 0.03 0.06 0.02 0.04 0.05 -0.00 0.07 0.17 -0.02 0.17 0.22 0.14 0.17 0.23 0.04 -0.00 0.07 0.10 -0.04 -0.03 0.07 0.05 0.00 0.02 0.02 0.02 0.02 ]
G [ 0.03 0.03 0.02 0.03 0.05 0.07 0.10 -0.01 0.17 -0.02 -0.05 0.01 -0.07 -0.03 0.00 0.07 0.14 -0.02 0.23 0.14 -0.01 0.05 0.07 0.03 0.02 0.02 0.04 ]
T [ 0.00 -0.01 0.01 -0.02 0.03 -0.02 -0.03 0.03 -0.02 -0.07 -0.07 -0.08 0.05 -0.06 0.11 -0.02 -0.02 0.04 -0.05 -0.01 0.02 -0.02 -0.03 -0.00 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 144

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages