Detailed information of deep learning profile BP000039.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000039.1
Cell line/tissue: HepG2
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DLS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.09 -0.00 0.01 -0.01 -0.00 -0.00 -0.01 0.01 -0.00 -0.00 0.01 -0.01 ]
C [ 0.00 0.02 0.01 -0.00 0.11 0.21 0.00 0.07 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.12 0.00 0.05 0.02 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.02 -0.00 0.00 0.23 0.10 0.07 0.22 0.14 -0.00 0.07 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.01 0.01 ]

Frequency matrix

       
A [ 4190 3861 3636 4819 5863 4600 3744 4214 3588 3944 4452 4519 4526 4698 4182 2967 4126 5070 2079 966 10744 1622 2973 14106 312 6099 1557 371 723 3307 6694 1889 2861 6064 3247 5061 3861 4785 4077 4050 4669 5362 4155 4529 4876 4799 4644 4739 4494 4578 ]
C [ 4221 3527 4589 5305 4013 3824 3398 4432 6652 5962 5292 5021 4708 4293 4822 5945 3984 2220 13047 16356 1349 9004 6641 420 96 135 533 97 1236 12069 1568 9116 5822 4371 3760 3575 3681 4635 5492 6308 5312 4080 4620 4392 4140 4244 4345 4363 4578 4479 ]
G [ 4635 5746 5651 3663 4241 4241 4142 4192 3344 3614 4157 4349 4215 3882 4376 2909 5656 7351 1583 416 2701 6699 1678 2084 17494 11592 10233 17328 14520 967 8505 4750 1932 5140 4654 4096 7116 4692 4821 3262 3516 4716 4865 4748 4743 4414 4400 4834 4950 4679 ]
T [ 5076 4988 4246 4335 4005 5457 6838 5284 4538 4602 4221 4233 4673 5249 4742 6301 4356 3481 1413 384 3328 797 6830 1512 220 296 5799 326 1643 1779 1355 2367 7507 2547 6461 5390 3464 4010 3732 4502 4625 3964 4482 4453 4363 4665 4733 4186 4100 4386 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.00 -0.00 -0.03 -0.02 0.02 -0.01 -0.05 0.04 -0.02 -0.02 0.11 -0.06 0.05 -0.08 -0.07 -0.07 -0.02 0.03 -0.03 -0.02 0.03 -0.02 0.01 -0.01 0.00 ]
C [ 0.04 0.02 0.02 0.03 0.07 0.05 -0.01 0.14 0.23 -0.02 0.14 0.07 0.00 -0.03 -0.07 0.01 -0.05 -0.02 0.17 -0.01 0.10 0.07 0.05 0.03 0.02 0.03 0.03 ]
G [ 0.02 0.02 0.02 0.02 0.00 0.05 0.07 -0.03 -0.04 0.10 0.07 -0.00 0.04 0.23 0.17 0.14 0.22 0.17 -0.02 0.17 0.07 -0.00 0.05 0.04 0.02 0.06 0.03 ]
T [ -0.00 -0.00 0.01 0.00 0.02 -0.01 -0.02 -0.05 -0.10 -0.03 -0.07 0.07 -0.03 -0.05 -0.08 0.03 -0.04 0.01 -0.03 -0.07 -0.01 0.04 -0.05 0.03 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 144

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000072.1 CTCF ENCSR000DRR GM12874 Homo sapiens MA0139.2
BP000073.1 CTCF ENCSR000DRU GM12875 Homo sapiens MA0139.2
BP000074.1 CTCF ENCSR000DRZ GM12878 Homo sapiens MA0139.2
BP000075.1 CTCF ENCSR000DSU astrocyte of the spinal cord Homo sapiens MA0139.2
BP000076.1 CTCF ENCSR000DSZ astrocyte of the cerebellum Homo sapiens MA0139.2
BP000077.1 CTCF ENCSR000DTA brain microvascular endothelial cell Homo sapiens MA0139.2
BP000078.1 CTCF ENCSR000DTF cardiac fibroblast Homo sapiens MA0139.2
BP000079.1 CTCF ENCSR000DTI cardiac muscle cell Homo sapiens MA0139.2
BP000080.1 CTCF ENCSR000DTL choroid plexus epithelial cell Homo sapiens MA0139.2
BP000081.1 CTCF ENCSR000DTO HCT116 Homo sapiens MA0139.2
Showing 10 profiles of page 8 from 45 pages