Detailed information of deep learning profile BP000038.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HeLa-S3 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000038.1
Cell line/tissue: HeLa-S3
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DLO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.12 0.19 0.06 0.10 0.21 0.00 -0.00 0.02 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.04 0.00 0.09 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.06 0.00 0.18 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.01 -0.00 0.08 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.00 -0.01 -0.00 ]

Frequency matrix

       
A [ 5255 4942 5081 5570 5460 5312 5224 5395 4837 5634 5360 4574 4903 4274 6511 7497 3061 8695 3078 1634 2530 2093 595 6791 465 393 2170 7734 1186 4606 522 1921 4244 5384 7480 5524 6171 5533 5183 5093 5559 5388 6181 8004 6486 4887 5165 4979 5768 6000 ]
C [ 5519 5756 5720 5300 5190 5533 5641 5707 5511 4186 3976 5691 5561 8282 4918 5504 6259 2560 5904 9975 1357 16917 20241 11390 14371 20654 2921 2425 8098 2768 611 2031 8471 6406 3589 5195 4650 5124 5104 4830 4264 4019 4999 5051 5036 5004 4460 6613 6728 5540 ]
G [ 5270 5386 5225 5189 5187 5057 5199 5483 4863 6263 7417 6421 5499 4427 4298 4565 5026 6717 10234 1984 13647 1589 221 762 187 134 588 7644 9980 1951 19153 14831 2978 4822 6900 5897 5279 5657 5856 6348 7027 7807 5356 4073 4487 4857 6172 5498 4290 4946 ]
T [ 5608 5568 5626 5593 5815 5750 5588 5067 6441 5569 4899 4966 5689 4669 5925 4086 7306 3680 2436 8059 4118 1053 595 2709 6629 471 15973 3849 2388 12327 1366 2869 5959 5040 3683 5036 5552 5338 5509 5381 4802 4438 5116 4524 5643 6904 5855 4562 4866 5166 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.02 0.04 -0.03 0.04 -0.00 -0.05 -0.01 0.02 -0.04 0.03 -0.06 -0.04 -0.01 0.07 -0.06 -0.01 -0.09 -0.04 -0.01 -0.00 0.03 0.01 0.02 0.01 0.00 ]
C [ 0.02 0.04 0.00 0.02 0.03 -0.01 0.05 0.14 -0.02 0.15 0.20 0.13 0.16 0.21 0.04 -0.01 0.06 0.07 -0.03 -0.03 0.05 0.04 -0.01 0.01 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.04 0.05 0.08 -0.01 0.14 -0.03 -0.04 -0.01 -0.08 -0.04 -0.01 0.06 0.12 -0.02 0.20 0.13 -0.01 0.03 0.05 0.02 0.01 0.01 0.02 ]
T [ 0.01 -0.00 0.01 -0.01 0.04 -0.01 -0.01 0.03 -0.01 -0.06 -0.06 -0.05 0.05 -0.05 0.10 -0.00 -0.02 0.05 -0.03 -0.01 0.02 -0.01 -0.02 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 361

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages