Detailed information of deep learning profile BP000038.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HeLa-S3 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000038.1
Cell line/tissue: HeLa-S3
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DLO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.00 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.08 -0.00 0.01 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.18 0.00 0.06 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.09 0.00 0.04 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.02 -0.00 0.00 0.21 0.10 0.06 0.19 0.12 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 5166 4866 4562 5855 6904 5643 4524 5116 4438 4802 5381 5509 5338 5552 5036 3683 5040 5959 2869 1366 12327 2388 3849 15973 471 6629 2709 595 1053 4118 8059 2436 3680 7306 4086 5925 4669 5689 4966 4899 5569 6441 5067 5588 5750 5815 5593 5626 5568 5608 ]
C [ 4946 4290 5498 6172 4857 4487 4073 5356 7807 7027 6348 5856 5657 5279 5897 6900 4822 2978 14831 19153 1951 9980 7644 588 134 187 762 221 1589 13647 1984 10234 6717 5026 4565 4298 4427 5499 6421 7417 6263 4863 5483 5199 5057 5187 5189 5225 5386 5270 ]
G [ 5540 6728 6613 4460 5004 5036 5051 4999 4019 4264 4830 5104 5124 4650 5195 3589 6406 8471 2031 611 2768 8098 2425 2921 20654 14371 11390 20241 16917 1357 9975 5904 2560 6259 5504 4918 8282 5561 5691 3976 4186 5511 5707 5641 5533 5190 5300 5720 5756 5519 ]
T [ 6000 5768 4979 5165 4887 6486 8004 6181 5388 5559 5093 5183 5533 6171 5524 7480 5384 4244 1921 522 4606 1186 7734 2170 393 465 6791 595 2093 2530 1634 3078 8695 3061 7497 6511 4274 4903 4574 5360 5634 4837 5395 5224 5312 5460 5570 5081 4942 5255 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.02 -0.01 0.02 -0.01 -0.03 0.05 -0.02 -0.00 0.10 -0.05 0.05 -0.05 -0.06 -0.06 -0.01 0.03 -0.01 -0.01 0.04 -0.01 0.01 -0.00 0.01 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.03 -0.01 0.13 0.20 -0.02 0.12 0.06 -0.01 -0.04 -0.08 -0.01 -0.04 -0.03 0.14 -0.01 0.08 0.05 0.04 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.01 -0.01 0.04 0.05 -0.03 -0.03 0.07 0.06 -0.01 0.04 0.21 0.16 0.13 0.20 0.15 -0.02 0.14 0.05 -0.01 0.03 0.02 0.00 0.04 0.02 ]
T [ 0.00 0.01 0.02 0.01 0.03 -0.00 -0.01 -0.04 -0.09 -0.01 -0.06 0.07 -0.01 -0.04 -0.06 0.03 -0.04 0.02 -0.01 -0.05 -0.00 0.04 -0.03 0.04 0.02 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 361

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000042.1 CTCF ENCSR000DMC kidney Homo sapiens MA0139.2
BP000043.1 CTCF ENCSR000DME LNCaP clone FGC Homo sapiens MA0139.2
BP000044.1 CTCF ENCSR000DMF LNCaP clone FGC Homo sapiens MA0139.2
BP000045.1 CTCF ENCSR000DMH lung Homo sapiens MA0139.2
BP000046.1 CTCF ENCSR000DML MCF-7 Homo sapiens MA0139.2
BP000047.1 CTCF ENCSR000DMO MCF-7 Homo sapiens MA0139.2
BP000048.1 CTCF ENCSR000DMR MCF-7 Homo sapiens MA0139.2
BP000049.1 CTCF ENCSR000DMS MCF-7 Homo sapiens MA0139.2
BP000050.1 CTCF ENCSR000DMV MCF-7 Homo sapiens MA0139.2
BP000051.1 CTCF ENCSR000DMY D721Med Homo sapiens MA0139.2
Showing 10 profiles of page 5 from 45 pages